Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0233 ATGGCGACGGAGAATCCTGTGAATTATAATAGATACATGAAGAGGAGTTTAGGCGATCTGAGTGTAGACGACAATTCATCGGCTTTCAGTGATTGTGGAAGCGATCGATCGGGCGAGTTTCCGACGGCGTCGTCGCAGAGCCGACGGCTTCTAATTGCGTGCACTTCAGATAACTCCGACGATCTCATTCGACAGCTTGTACTGGACCTTGATTCCTGTTCGATTGATGAGCAAAAGCAGGCGGCGATGGAGATCAGACTACTTGCAAAAAATAAGCCGGAGAATCGACTGAAAATTGCTAAGGCCGGAGCGATTAAGCCGTTGATTACTCTAATTTCATCTACCGATCCTCAGCTTCAAGAGTACGGCGTGACGGCGGTTTTGAATCTTTCACTGTGCGACGAGAACAAGGAACTGATAGCTTCGGCGGGAGCAATCAAACCTCTGGTTCGAGCTCTCCGGACGGGAACATCGACAGCCAAAGAGAACGCAGCCTGCGCTCTACTCCGGTTATCGCAAGTTGAGAAAAACAAGATCCCGATTGGACGAAGTGGAGCGATTCCGCTCCTCGTGGACCTTCTAGAACACGGCGGTATCCGCGGGAAGAAAGACGCATCAACCGCTCTGTATTCCCTCTGTTCAGTTAAGGAAAACAAAATCAGAGCCGTCCAAGCAGGAATCATGAAACCACTAGTGGAATTGATGGCTGATTTCGGGTCAAACATGGTGGACAAGTCAGCTTTCGTGTTGAGCGTTCTGGTAACCGTAACTGAAGCCAAAACGGAGTTGGTAGACGAGGGAGGGATACCGGTTGTAGTGGAAATCCTTGAGGTGGGGACACAGAGACAGAAGGAGATTGCGGCGGCCATTTTGCTTCAGATTTGCGAGGATAGCGTGGCCTACCGGACCATGGTGGCGCGAGAAGGCGCGATTCCGCCCTTAGTGGCTTTGTCACAATCTGGCACCAATCGCGCCAAGCAAAAGGCTGAGAAACTGATAGAGTTTCTACGACAACCGAGATCCGGCAACCCCGCTACCACAACATCAGACGTGTCGGTATGA 1062 50.94 MATENPVNYNRYMKRSLGDLSVDDNSSAFSDCGSDRSGEFPTASSQSRRLLIACTSDNSDDLIRQLVLDLDSCSIDEQKQAAMEIRLLAKNKPENRLKIAKAGAIKPLITLISSTDPQLQEYGVTAVLNLSLCDENKELIASAGAIKPLVRALRTGTSTAKENAACALLRLSQVEKNKIPIGRSGAIPLLVDLLEHGGIRGKKDASTALYSLCSVKENKIRAVQAGIMKPLVELMADFGSNMVDKSAFVLSVLVTVTEAKTELVDEGGIPVVVEILEVGTQRQKEIAAAILLQICEDSVAYRTMVAREGAIPPLVALSQSGTNRAKQKAEKLIEFLRQPRSGNPATTTSDVSV 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1013458 1015322 - Conep20aG0024300.1 Cone20ag0233 460137

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0233 353 Gene3D - 252 338 IPR011989 -
Cone20ag0233 353 FunFam RING-type E3 ubiquitin transferase 52 342 - -
Cone20ag0233 353 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 103 145 IPR000225 GO:0005515(InterPro)
Cone20ag0233 353 SUPERFAMILY ARM repeat 60 334 IPR016024 -
Cone20ag0233 353 Gene3D - 42 251 IPR011989 -
Cone20ag0233 353 PANTHER U BOX DOMAIN-CONTAINING 53 338 - -
Cone20ag0233 353 SMART arm_5 133 173 IPR000225 GO:0005515(InterPro)
Cone20ag0233 353 SMART arm_5 174 214 IPR000225 GO:0005515(InterPro)
Cone20ag0233 353 SMART arm_5 256 296 IPR000225 GO:0005515(InterPro)
Cone20ag0233 353 SMART arm_5 92 132 IPR000225 GO:0005515(InterPro)
Cone20ag0233 353 SMART arm_5 215 255 IPR000225 GO:0005515(InterPro)
Cone20ag0233 353 Pfam Armadillo/beta-catenin-like repeat 93 131 IPR000225 GO:0005515(InterPro)
Cone20ag0233 353 Pfam Armadillo/beta-catenin-like repeat 176 214 IPR000225 GO:0005515(InterPro)
Cone20ag0233 353 Pfam Armadillo/beta-catenin-like repeat 134 172 IPR000225 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0233 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0233 Cone-Chr20:1013458 Cone18ag0344 Cone-Chr18:1688095 4.68E-12 dispersed
Cone17ag0886 Cone-Chr17:7020764 Cone20ag0233 Cone-Chr20:1013458 2.04E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g651 . . . . . . . . Cmo05g00143 Cmo12g00537 . . . Car12g00540 Sed10g1203 . Cpe07g00515 Bhi04g00413 Tan02g1737 Cmetu03g0693 . Hepe08g1331 . Lcy13g2131 Cla08g01619 Cam08g2121 Cec08g1706 Cco08g1830 Clacu08g1806 . Cre08g1588 . . Cone17ag0886 Cone20ag0233 . . . Cme03g02100 . . . . . . . . . . . Cma12g00597 Cma05g00141 Car05g00123 . Cpe11g00122 . . . . . . . . . . . . . . . Lsi08g01525 Csa02g01897 Chy03g01589 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009336 0 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34