Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0234 ATGTGGAAGCAAATCGGAGACAGAGAATCGGGATTACTCCGAGCTTATTCTTTCTCAAATCGCATTAAATCTTATCGAATCGACACTCTTCAACTTTCCAATCGTAAAGACATCGTCTCCCCTCACAGAGGCTCCATTAACACTCTTCAGGTTGATTTGACAGAGGGGAGGTATCTTCTATCCGGGGCATCAGATGCATCGGCTGCAGTTTACGATATTCAACGAGCTACTGATATCGAAGGGAATGGTCTAATTTCAAAGCACAAATATCTATTTACCATTGACAAGCAACATGAGAATGGCCATAAATATGCCATTTCGTCAGCTATATGGTACCCGGTAGATACAGGTCTATTCATCACAGGGTCATATGATCATCGCATAAATGTTTGGGACACAAATACCACTCAGGTGGTGATGAATTTCAAAATGCCGGGAAAGGTTTATAAAACTGCAATGTCGGCTATAGCTACATCCCATATGCTTGTTGCCGCCGGCACAGAAGATGTTCAGGTTCGCCTTTGTGATATTGCTTCAGGCGCATTTGCTCACACACTGTCTGGTCACCACAATGGTGTAATGTCAGTAGAATGGTCCACTTCTAGTGAGTGGGTTTTAGTTACTGGGGGATGTGATGGAGCTATTCGGTTTTGGGACATCAGACGAGCTGGATGTTTTCGTGTTTTAGATCAGACTATGTCTCAACTTGGAAAGCGCCCCCCTCTTTTAGAACAAGTGGCCACAAATAAGATTTCAACTTCTAGGTCAAGGATGCCACAGAAGAAACTGGTTAATGGGAACACGACAAAACATTCATCCACAGGTAAAATTCCAGGCAAGGGATCTATGAAGCAGAGGTTGCACCCAGGGATGTTATCTACTCAGGATCGGGCCACAGCTCATTATGGTGCTGTTATTGGATTAAACGTGACCGGAGATGGCATGTATCTTCTCAGTGCAGGTTCTGATTCAAGATTGAGGTTGTGGGACATTGAATCCGGCCGTAATACACTCGTAAACTATGAAACAGTGCGCTTACAGACTAGCAAGCCAATGCAATTAGCCACAACTCAAGATTCATCTCTTGTGTTTGTTCCATGTATGTCTGCTGTGAAAGCATTTGATCTGTGGACGGGGAAGACATCCCTTGCATTTCAAGGCCACTACGAATCTGTGAACTGTTGCTGGTTCAGTTCCCAAGATCAAGAACTGTACACGGGAGGCAACGATAGACAAATTCTCGTCTGGTCACCATCTAACTCGGTCTCTGATGAAATGGGGGGCGGGCCAGGTATGGATCAGGATAACTGGAGCGATTGA 1320 44.77 MWKQIGDRESGLLRAYSFSNRIKSYRIDTLQLSNRKDIVSPHRGSINTLQVDLTEGRYLLSGASDASAAVYDIQRATDIEGNGLISKHKYLFTIDKQHENGHKYAISSAIWYPVDTGLFITGSYDHRINVWDTNTTQVVMNFKMPGKVYKTAMSAIATSHMLVAAGTEDVQVRLCDIASGAFAHTLSGHHNGVMSVEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFRVLDQTMSQLGKRPPLLEQVATNKISTSRSRMPQKKLVNGNTTKHSSTGKIPGKGSMKQRLHPGMLSTQDRATAHYGAVIGLNVTGDGMYLLSAGSDSRLRLWDIESGRNTLVNYETVRLQTSKPMQLATTQDSSLVFVPCMSAVKAFDLWTGKTSLAFQGHYESVNCCWFSSQDQELYTGGNDRQILVWSPSNSVSDEMGGGPGMDQDNWSD 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1016788 1019352 - Conep20aG0024400.1 Cone20ag0234 460138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0234 439 PRINTS G protein beta WD-40 repeat signature 317 331 IPR020472 -
Cone20ag0234 439 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Cone20ag0234 439 PRINTS G protein beta WD-40 repeat signature 119 133 IPR020472 -
Cone20ag0234 439 MobiDBLite consensus disorder prediction 254 279 - -
Cone20ag0234 439 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 1 439 IPR042238 GO:0000109(PANTHER)|GO:0000209(PANTHER)|GO:0006283(PANTHER)|GO:0006283(InterPro)|GO:0031464(PANTHER)|GO:0043161(PANTHER)
Cone20ag0234 439 MobiDBLite consensus disorder prediction 419 439 - -
Cone20ag0234 439 ProSitePatterns Trp-Asp (WD) repeats signature. 317 331 IPR019775 -
Cone20ag0234 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 221 - -
Cone20ag0234 439 MobiDBLite consensus disorder prediction 254 283 - -
Cone20ag0234 439 FunFam Excision repair cross-complementation group 8 279 420 - -
Cone20ag0234 439 Pfam WD domain, G-beta repeat 299 330 IPR001680 GO:0005515(InterPro)
Cone20ag0234 439 Pfam WD domain, G-beta repeat 183 219 IPR001680 GO:0005515(InterPro)
Cone20ag0234 439 Pfam WD domain, G-beta repeat 383 417 IPR001680 GO:0005515(InterPro)
Cone20ag0234 439 Pfam WD domain, G-beta repeat 100 132 IPR001680 GO:0005515(InterPro)
Cone20ag0234 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 385 417 IPR001680 GO:0005515(InterPro)
Cone20ag0234 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 99 141 IPR001680 GO:0005515(InterPro)
Cone20ag0234 439 SMART WD40_4 87 132 IPR001680 GO:0005515(InterPro)
Cone20ag0234 439 SMART WD40_4 288 330 IPR001680 GO:0005515(InterPro)
Cone20ag0234 439 SMART WD40_4 32 72 IPR001680 GO:0005515(InterPro)
Cone20ag0234 439 SMART WD40_4 378 417 IPR001680 GO:0005515(InterPro)
Cone20ag0234 439 SMART WD40_4 179 219 IPR001680 GO:0005515(InterPro)
Cone20ag0234 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 298 339 IPR001680 GO:0005515(InterPro)
Cone20ag0234 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 228 IPR001680 GO:0005515(InterPro)
Cone20ag0234 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 298 335 - -
Cone20ag0234 439 ProSitePatterns Trp-Asp (WD) repeats signature. 206 220 IPR019775 -
Cone20ag0234 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 385 417 - -
Cone20ag0234 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 99 135 - -
Cone20ag0234 439 SUPERFAMILY WD40 repeat-like 39 420 IPR036322 GO:0005515(InterPro)
Cone20ag0234 439 Gene3D - 1 420 IPR015943 GO:0005515(InterPro)
Cone20ag0234 439 FunFam Transducin/WD40 repeat-like superfamily protein 2 267 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0234 K10570 - - mdm:103455895 726.857
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0887 Cone-Chr17:7024687 Cone20ag0234 Cone-Chr20:1016788 1.92E-299 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g648 . . . . . . . . . Cmo12g00539 . . . Car12g00543 . . Cpe07g00517 Bhi04g00418 Tan02g1734 Cmetu03g0611 . Hepe08g1335 . Lcy13g2133 Cla08g01622 Cam08g2124 Cec08g1709 Cco08g1833 Clacu08g1810 . Cre08g1591 . . Cone17ag0887 Cone20ag0234 . . . Cme03g02103 . . . . . . . . . . . Cma12g00599 . . . . . . . . . . . . . . . . . . . Lsi08g01528 Csa02g01894 Chy03g01592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007829 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 6 1 36