Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0239 ATGGTGGATCTAAAGCTAGGTGTGAGTGGTGGCGGGCAAGTGCTAGATCTAGAAACCGCCGTAAAAGATGGTATTTTGGGCGGCGCATGTGGTGGCGGGTTAATCTGCGGCGAAGTAACCAAGAAATTCGATCTGAAGGAAATGATAGAAGAACTCGACTCGATCGATGTACCCTCCGTTTTCATCTGCCCAATCTCATTGGAGCCCATGAGAGACCCTGTAACTCTCTGCACTGGCCAAACCTACGAGAGATCGAACATAGTCAAATGGTTCTCTTTAGGACATTTCACTTGCCCTACCACGATGCAAGAGCTATGGGACGATTCAATCACTCCTAATATAACCCTTCACCAGCTGATTTACAGCTGGTTTTCGCAAAAGTACTTGGCTTTGATGAAGAGATCAGAAGATGTTCAAGGAAGAGTCGTAGAGCTTTTAGAAACGTTGAAAAAAGCTAAAGGTCAAACTAGAGTACAGAGCTTGAAGGAGCTCAAACGAATCGTAGCCATCCATTCTCTGGCTAAGAAGACAGTAGTTGATTATGGTGGGGTTCGGTTAATCTCTTCGCTGCTAAATTATTTCACCTCCCATGCTGTTGGATCGGAAGTAGTGGGAATCTTAGTTAACTTAGATCTCGATTCGGAATCTAAGAAGAATCTGATTCAACCTGCTAAGGTATCTTTAATGGTAGATATACTAAACGAAGGATCGATGGAGACAAAGATCAATTGCTCGAAATTTATCGAGATGTTATTAGAAGGCCTAGATTTTGGTGCAGAAAACATATCTAGCTTGAGCCTATTAGTTGGATTGCTAAGACTAGTAAAAGATAAGAGATGTCCAGACGTGGTCTTAGCCGGACTTAGTTTACTCAAAACAATCTGTTCATACAAAACAGTTAAGTACTCAGCCTTGAGTATTGGAACGGTTCCGAAATTGGTTGAGCTTTTACCGAGTTTAAACCCGGACTGTGTTGAGTTGGCTTTACATGTTCTAGAAGCATTGTCAGGTCTCCCGGAAGGAAGATTGGCTTTGAAGGATTGCCCGGAAACGATATTGAATGTGGTGAAGCTGTTAATGAGAGTGTCGGAAAATTGTACTCAGCTTGGTTTGGGGATACTGCGGGCAGTTTGTAAGCTTGCGCCTGAAGAATGTGCTTCTGTTGCTGTAGAGGCTGGCTTGGCGGCTAAGTTATTGCTTGTTATACAGAGTGGGTGTGATCCGGTTTTGAAGCAGCAATCTGCTGAGTTGTTGAAATTGTGTAGTTTGAATTACACGGCTACTATTTTCATTTCTAAGTGTAAGCTCACAAGAACTATACAATAA 1326 42.76 MVDLKLGVSGGGQVLDLETAVKDGILGGACGGGLICGEVTKKFDLKEMIEELDSIDVPSVFICPISLEPMRDPVTLCTGQTYERSNIVKWFSLGHFTCPTTMQELWDDSITPNITLHQLIYSWFSQKYLALMKRSEDVQGRVVELLETLKKAKGQTRVQSLKELKRIVAIHSLAKKTVVDYGGVRLISSLLNYFTSHAVGSEVVGILVNLDLDSESKKNLIQPAKVSLMVDILNEGSMETKINCSKFIEMLLEGLDFGAENISSLSLLVGLLRLVKDKRCPDVVLAGLSLLKTICSYKTVKYSALSIGTVPKLVELLPSLNPDCVELALHVLEALSGLPEGRLALKDCPETILNVVKLLMRVSENCTQLGLGILRAVCKLAPEECASVAVEAGLAAKLLLVIQSGCDPVLKQQSAELLKLCSLNYTATIFISKCKLTRTIQ 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1039077 1041058 + Conep20aG0024900.1 Cone20ag0239 460143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0239 441 ProSiteProfiles U-box domain profile. 56 130 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone20ag0239 441 PANTHER WDSAM1 PROTEIN 54 436 IPR045185 GO:0061630(InterPro)
Cone20ag0239 441 Gene3D - 134 431 IPR011989 -
Cone20ag0239 441 SMART Ubox_2 60 123 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone20ag0239 441 CDD RING-Ubox_PUB 58 108 IPR045210 -
Cone20ag0239 441 SUPERFAMILY ARM repeat 227 424 IPR016024 -
Cone20ag0239 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 133 IPR013083 -
Cone20ag0239 441 Pfam U-box domain 57 127 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone20ag0239 441 SUPERFAMILY ARM repeat 144 255 IPR016024 -
Cone20ag0239 441 SUPERFAMILY RING/U-box 51 129 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0239 Cone-Chr20:1039077 Cone3ag1183 Cone-Chr3:30496195 3.07E-38 dispersed
Cone17ag0896 Cone-Chr17:7048897 Cone20ag0239 Cone-Chr20:1039077 2.98E-288 wgd
Cone20ag0239 Cone-Chr20:1039077 Cone4ag1625 Cone-Chr4:12321853 3.44E-207 wgd
Cone20ag0239 Cone-Chr20:1039077 Cone7ag1324 Cone-Chr7:9687474 2.43E-207 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0239 - - - 0.0