Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0241 ATGGAGAAGATCTGTGTAGCAGTGCGACTGAGGCCTCCTGCATCTCAAGATTCTCTTTCCCTTGGAACATTCTGGAAAATCGATGACAATCGCATTTCACTTCACAGAGCTCATGGCACTCCTATCTCTGGGCTTTCCTATGCTTTTGATCATGTATTCGATGAAAGCTGCACAAATTCTAGGGTTTACGACCTTCTCACTAAGGATATTATTCATGCCGCAGTTGAAGGTTTTAACGGAACTGCTTTTGCTTATGGACAAACAAGCAGTGGCAAGACTTTCACCATGAATGGTTCCGAGACAGATCCTGGAATTATTCACCGTGCAGTTAAAGACATATTTGGTAGAATTCAGATGGTGACGGATAGAGAGTTCCTTATTCGAGTTTCCTACATGGAAATTTACAATGAAGAAATCAATGATCTTTTTGCTGTAGAGAACCAGAAATTGCAGATTCATGAGAGCTTAGATCGTGGGATATTCGTTGCGGGTCTTAGAGAGGAAATAGTGAATAATGCTGAGCAAGTTCTAAGACTCATAGAACGTGGAGAAGTAAATAGGCACTTTGGTGAAACAAATATGAATGCTAGGAGTAGTCGATCCCATACCATATTCAGAATGGTTATTGAAAGCAAGGGAAAGGACCCGACTTCTTCGGATGACTATTCAAATACCGATGCTATTCGTGTCTCTGTTTTGAATTTAGTAGATTTAGCTGGATCAGAGCGAATAGCTAAAACTGGAGCTGGTGGAGTACGTTTAAAAGAAGGGAAGCACATAAATAAGAGCTTGATGGTTCTTGGTAATGTGATCAACAAATTGAGTGAAGGTGCAAAGCAGAGGGGACATGTTCCTTACAGAGATAGTAAGCTGACTCGTATACTCCAACCGGCTCTTGGTGGTAATGCCAAAACTTCAATAATATGCACTATCTCGCCAGAAGAGATACATGTTGAGGAAACAAAGGGTACTCTTCAATTTGCTAGCAGAGCCAAACGCATCACCAATTGTGTCCAAGTTAACGAGATATTGACAGATACCGCCCTGATGAAGCGCCAACAGCTGGAGATCGAGGAATTACGCAAAAAACTCCAGGGATCTCACTCCGAAGTGCTTGAACAAGAGGTCTTAAAATTGAGGAATGATTTGCTCAAGTATGAACTAGAGCGTGAAAAGCTGGAAATGGAACTTCAGCAGGAGAGGAATTCACACAAAGAACGCGAACAATGCATCAGGGAGCAACAGATGAAAATTGATAATCTGAGTAGTCTCGTTACTCTCTCAGAGCCTGAAAGGAACTTCAGTCAAGGGGAAGATTCAGTAACACAAACCCTTAAAGAGGAATGCAGTAACGGCAATATAAAATGCCAAGGAGATTCTTTTACGACGCCTTGTTTCAAAGCAGCCCCAAATTCTTTTGTAGTCAAGCGGTCAACTTATTCAATGCTTCCTGATAATAGCCCTCTTCCTGATACTTTTAGTAACGTTGCTGATGAGGACATGTGGTTGAAAATGAACAAGGGTTTCATCGCTGACCTTGATACACTCCAAATGACCCCTGCTAGAGATCTTCAATCATCTCCATCATTTAACAGAGCTCCTGATTTTTCAAATGAAAACCCTCAGCTAGAGCTTGAAGATATGAAGAGACAACTAGAACTTGCCATCTTGGAGAAGAATGAACTCAAGAAAAAGTTTGAGGAACAAGTACTATCAAACAATCAATTAATGGAAGAGATATCTGAGCTAAAACAAGAAGCAAGACTTGCTAAGGAAATCCCACAAACGTTGTCCAAGTCTATGGTTAGCTGCAAAGATATTTATGAGGACGTTTTGTCGACAATGAAGAATCTTACATCTGATGGGGAAATGTCGAAATTTCTCTCAAGCATGAGTCAACTCTGTACAATCCTTTTTAATACTCTGGAAGCTCAGTTATCCATGGCTTCGGACGGGAAGGGATATATCTCAGCGAATAATTCCTTTACCCAAGAGCAAGGAGTCTTCCATGAGAGGCTGTTTAGCACAATAAGACCTTTGATACCGCCAATAAGCAATTGTAAAGAGGCAATAGATTCATCAGGTAGCGGCAATAACAAGGGCTCTGCTATGGAAGAAGAATTTCACAGTTGGAAGGAAGACTTAAGCGCTGAATTAAAGGAAATCAGAGCACGATGCCATGATTTAGAACAAGAGTTAGATTCCAATAACAAGCTTCTGGAAAATTACAAGCAGAAGTATGAATCCATGGACAGAGAGTTCCTGATTTTGAAAGACGAAAAATACTGTTTGATCAAAACGGTTTCTGAATCATCTCAAACAATTCAGCTGATAACCGAGCAGAAGGAAAATGCGTTGAAGGATTTAAACAGTGAAGTGCAGAGAAGGAGAGAACTTCTGAACGGGATTAAAGAGTTCAGTGTTGCACTTGCTCGCAGGCAGAGCTCATTTTCGTCTTTCAGCAAGGAAGTAAAGTCTAGAACTGAGAAATTGAAAGCCCAAAATGTAGTTGGAGTGACCAAATATCTTGGGTCTAATTAA 2541 40.77 MEKICVAVRLRPPASQDSLSLGTFWKIDDNRISLHRAHGTPISGLSYAFDHVFDESCTNSRVYDLLTKDIIHAAVEGFNGTAFAYGQTSSGKTFTMNGSETDPGIIHRAVKDIFGRIQMVTDREFLIRVSYMEIYNEEINDLFAVENQKLQIHESLDRGIFVAGLREEIVNNAEQVLRLIERGEVNRHFGETNMNARSSRSHTIFRMVIESKGKDPTSSDDYSNTDAIRVSVLNLVDLAGSERIAKTGAGGVRLKEGKHINKSLMVLGNVINKLSEGAKQRGHVPYRDSKLTRILQPALGGNAKTSIICTISPEEIHVEETKGTLQFASRAKRITNCVQVNEILTDTALMKRQQLEIEELRKKLQGSHSEVLEQEVLKLRNDLLKYELEREKLEMELQQERNSHKEREQCIREQQMKIDNLSSLVTLSEPERNFSQGEDSVTQTLKEECSNGNIKCQGDSFTTPCFKAAPNSFVVKRSTYSMLPDNSPLPDTFSNVADEDMWLKMNKGFIADLDTLQMTPARDLQSSPSFNRAPDFSNENPQLELEDMKRQLELAILEKNELKKKFEEQVLSNNQLMEEISELKQEARLAKEIPQTLSKSMVSCKDIYEDVLSTMKNLTSDGEMSKFLSSMSQLCTILFNTLEAQLSMASDGKGYISANNSFTQEQGVFHERLFSTIRPLIPPISNCKEAIDSSGSGNNKGSAMEEEFHSWKEDLSAELKEIRARCHDLEQELDSNNKLLENYKQKYESMDREFLILKDEKYCLIKTVSESSQTIQLITEQKENALKDLNSEVQRRRELLNGIKEFSVALARRQSSFSSFSKEVKSRTEKLKAQNVVGVTKYLGSN 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1050096 1054447 + Conep20aG0025200.1 Cone20ag0241 460145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0241 846 PRINTS Kinesin heavy chain signature 284 305 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone20ag0241 846 PRINTS Kinesin heavy chain signature 77 98 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone20ag0241 846 PRINTS Kinesin heavy chain signature 232 250 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone20ag0241 846 PRINTS Kinesin heavy chain signature 192 209 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone20ag0241 846 CDD KISc_CENP_E 3 334 - -
Cone20ag0241 846 Coils Coil 545 593 - -
Cone20ag0241 846 Coils Coil 712 760 - -
Cone20ag0241 846 PANTHER CENTROMERE PROTEIN E 2 834 IPR027640 GO:0003777(InterPro)|GO:0007018(InterPro)
Cone20ag0241 846 Coils Coil 350 408 - -
Cone20ag0241 846 Coils Coil 779 799 - -
Cone20ag0241 846 SMART kinesin_4 1 342 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone20ag0241 846 FunFam Centromere-associated protein E 1 365 - -
Cone20ag0241 846 ProSiteProfiles Kinesin motor domain profile. 3 334 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone20ag0241 846 Gene3D Kinesin motor domain 1 366 IPR036961 -
Cone20ag0241 846 Pfam Kinesin motor domain 41 334 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone20ag0241 846 ProSitePatterns Kinesin motor domain signature. 231 242 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Cone20ag0241 846 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 366 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0241 K11498 - - cit:102628575 1074.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0241 Cone-Chr20:1050096 Cone8ag1224 Cone-Chr8:10345782 3.71E-87 dispersed
Cone3ag0020 Cone-Chr3:130833 Cone20ag0241 Cone-Chr20:1050096 8.31E-145 transposed
Cone17ag0899 Cone-Chr17:7058806 Cone20ag0241 Cone-Chr20:1050096 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g616 . . . . . . . . . Cmo12g00547 . . . Car12g00552 . . Cpe07g00529 Bhi04g00452 . . . . . . Cla08g01638 Cam08g2142 Cec08g1729 Cco08g1849 Clacu08g1830 . Cre08g1613 . . Cone17ag0899 Cone20ag0241 . . . Cme03g02122 . . . . . . . . . . . Cma12g00609 . . . . . . . . . . . . . . . . . . . Lsi08g01544 Csa02g01874 Chy03g01612 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012517 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 28