Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0242 ATGTCGAATCACACGCAGTCCTCTGGTGCGCAGTTCCGACCAGTGATTCCTCCACAACAAGGGCAGCCATTTATTCCTTCCCAACACTTTCAGCAGCAGTTTCCTCCAAGGCAAAGTCATCCAGGGTATGCAGCACCCTCATCACAGGCAATGCCAATGTCGTATGTTCAGACAAGGCCACTTACATCTGGTCTGCCTCAGGCTCAGCAAAATGCTCATCCTTTCCCCAATCAGATGCCTGGCTTGGGGGCCCCTGGAATACCACACTCTTCAGCATATACATATGCACCTTCTCCTTTTAGTCAGGCACCAAACAATGTCAGTTCAACATCCCACTTCCAGCAAATGTCACAAATGCATGCCCCTGCTATGCCTGCTCCAGGGCAACCGTGGCAATTGTCTGGAAGCCAGGCTACAACACATGTTACAACGGTGGATCAGGGTAGCCAGCAATCTTCAGTCACTCCTACAGATTCAACTGTAAATGTTTCTAGCCTTAGTCAGCCATCTGCATCTGATTGGCAAGAGCACACATCTGCTGATGGGAGGAGATATTATCACAATAAACGGACAAAACAATCCAGTTGGGAGAAGCCTTTGGAATTGATGACGCCCCTTGAGAGAGCTGATGCATCAACTGTTTGGAAGGAATTTACTTCTCCAGATGGAAGGAAGTACTATTACAACAAGGTGACAAGGGAATCAAAATGGACGATTCCAGAGGAATTAAAGCTTGCTCGGGAGCAAGCTCAAAGAGAAGCGAGCCAGGGAATACAGCCTGAGGTAACTGTAGCTTCTCATGCTGATACCGCATCTGGTGTCTCATCAGCTGAGACACCAATGGCAAATACTTCTGGCTCTACCTCCAACATCCCCACAGCATCCAGGAGTATGCTTAGTCCCGTTCCAGTCATTCTGGTTGGTACTGTATCAAATTCTCCTTCTGTTGTGGTTTCTGGATCATCAGCAGTTCTAGGCATGCAAACTGCTGCAACTAGTGTAGTTGGTGTGCAGTCTGCTGCAATAACTACGGTCACTCAACTTGATCCTGGTCCAGGGATTACTGGAGGTCCTGCGAGTTCAGTTCCTACCAACTCCTCATCTATGAGCTCTTTTGAAAGAGTAGCATCTCAAGATGTTATAAATCCTGTAGATGGATCTTCTACCCAAGATATTGAGGAAGCAAGAAAAGGAATGGCAGTTGCTGGAAAAGTTAATGTTACTCCTTCAGAGGAGAAAGGAGTTGATGATGAACCATTAGTATTTGCAACTAAGCTGGAGGCAAAAAATGCATTCAAAGCACTACTAGAATTTGCTAATGTTCAATCCGATTGGACATGGGAGCAGACGATGAGAGAGATTATTAATGACAAAAGATATGGTGCTTTAAAAACGCTAGGCGAGCGGAAGCAAGCATTTAATGAGTACTTGGGTCAGAGGAAGAAATTGGAGGCTGAGGAGAGACGCATGAGGCAGAAAAGAGCTCGGGAGGAGTTCACCAAGATGTTAGAAGAGTCCGAGGATCTTACATCATCCATCAGATGGAGCAAAGCTGTTAGTATGTTTGAAAATGATGAAAGGTTCAAAGCTGTTGAAAGGATTAGAGATCGTGAGGATCTTTTTGAAAGCTACATTGTGGAACTTGAGAGAAAGGAAAAGGAAAGGGCTTCTGAGAAACATAAGAGGAATATAGCTGAGTACAGAGAATTTCTCGAGACATGTGATTTCATCAAGGTGAACAGCCAGTGGCGGAAAGTTCAAGATCGATTGGAGGATGATGAAAGATGTTCACGTCTTGAAAAACTTGACCGTTTGCTAATTTTCCAGGACTTTATCCGTGACTTGGAGAAGGAAGAGGAAGAGCAGAAGAGGATACAAAAAGAACTAATGAGGCGGGTTGAGCGAAAAAACCGTGATGAGTTTCGCAAACTCATTGAAGAGCATGTTGCTGAGGGTGTTCTTACAGCTAAAACCAACTGGCGTGATTTCTGCATGAAGATAAAGGATTTACCTCAATACCAAGCAGTTGCTTCAAATACATCTGGCTCAACACCGAAGGATTTATTTGAAGATGTATCTGAAGGGTTAGAGAAGCAGTACCATGAAGATAAATCTCTCGTAAAAGATGCAATGAAGTCGCAAAAGATTAGCATGGTATCAACATGGACTTTTGAGGACTTTAAGGCTTCCATTGAAGAAGAGGCTGGTCCACTACCTATTTCAAGTATCAACTTTAAGCTTGTCTATGAGGAGTTATTAGAGAGAGCGAAGGAGAAGGAGGAGAAAGAAGCTAAAAAACGCCAGCGAATTGCTGATGACTTTTCTAAGTTGTTGCACAGCATCAAGGAAATAACTGCAACTTCAATCTGGGAGGACAGCAAACAATTTTTTGAAGAGAGCGACGAGTACGGATTGATTGCAGAGGAGAGCTTTGGAAGGGAGATTTTTGAGGAACACATTGCTTACTTGCAAGAGAAGGCCAAAGAGAAAGAACGAAAGCGTGAAGAGGAGAAGGCCAAAAAAGAAAAAGAAAGAGAAGAGAAAGAGAAACGGAAGGAGAAAGAAAGAAAGGAGAAGGATAAAGGAGAAAAAGAAAAAGAAAAGGGGAAAGATCGATCTAAGAAAGACGACTCAGATAGTGACACGATGGATGTATCAGAAAGTCAAGAACTTAAAGAGGGTAAGAAAAGGGAGAAAGACAGAGACAGGAAACACAGGAAGCGTCATCAAAGCACCACTGAAGAAGCTGGTTCTGACAAGGAAGAAAAAGAGGATTACAAGAAGTCACGTAAACATGGTAGTGACCGTAAACGATCAAGAAAGCATGTGTATTCACCTGAATCTGAGAACGAAAGCCGGCATAGAAAACACAGGAGAGATCATCGAGATGGTTCAAGAAGAAATGGTGGGTACGAGGAACTTGAAGATGGGGAGCTTGGTGAAGATGGCGAAATCCAGTAG 2961 43.87 MSNHTQSSGAQFRPVIPPQQGQPFIPSQHFQQQFPPRQSHPGYAAPSSQAMPMSYVQTRPLTSGLPQAQQNAHPFPNQMPGLGAPGIPHSSAYTYAPSPFSQAPNNVSSTSHFQQMSQMHAPAMPAPGQPWQLSGSQATTHVTTVDQGSQQSSVTPTDSTVNVSSLSQPSASDWQEHTSADGRRYYHNKRTKQSSWEKPLELMTPLERADASTVWKEFTSPDGRKYYYNKVTRESKWTIPEELKLAREQAQREASQGIQPEVTVASHADTASGVSSAETPMANTSGSTSNIPTASRSMLSPVPVILVGTVSNSPSVVVSGSSAVLGMQTAATSVVGVQSAAITTVTQLDPGPGITGGPASSVPTNSSSMSSFERVASQDVINPVDGSSTQDIEEARKGMAVAGKVNVTPSEEKGVDDEPLVFATKLEAKNAFKALLEFANVQSDWTWEQTMREIINDKRYGALKTLGERKQAFNEYLGQRKKLEAEERRMRQKRAREEFTKMLEESEDLTSSIRWSKAVSMFENDERFKAVERIRDREDLFESYIVELERKEKERASEKHKRNIAEYREFLETCDFIKVNSQWRKVQDRLEDDERCSRLEKLDRLLIFQDFIRDLEKEEEEQKRIQKELMRRVERKNRDEFRKLIEEHVAEGVLTAKTNWRDFCMKIKDLPQYQAVASNTSGSTPKDLFEDVSEGLEKQYHEDKSLVKDAMKSQKISMVSTWTFEDFKASIEEEAGPLPISSINFKLVYEELLERAKEKEEKEAKKRQRIADDFSKLLHSIKEITATSIWEDSKQFFEESDEYGLIAEESFGREIFEEHIAYLQEKAKEKERKREEEKAKKEKEREEKEKRKEKERKEKDKGEKEKEKGKDRSKKDDSDSDTMDVSESQELKEGKKREKDRDRKHRKRHQSTTEEAGSDKEEKEDYKKSRKHGSDRKRSRKHVYSPESENESRHRKHRRDHRDGSRRNGGYEELEDGELGEDGEIQ 986
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1054438 1062850 - Conep20aG0025300.1 Cone20ag0242 460146

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0242 986 MobiDBLite consensus disorder prediction 826 898 - -
Cone20ag0242 986 SUPERFAMILY FF domain 768 829 IPR036517 -
Cone20ag0242 986 CDD WW 215 242 IPR001202 GO:0005515(InterPro)
Cone20ag0242 986 MobiDBLite consensus disorder prediction 349 368 - -
Cone20ag0242 986 ProSiteProfiles FF domain profile. 632 695 IPR002713 -
Cone20ag0242 986 Coils Coil 473 493 - -
Cone20ag0242 986 SUPERFAMILY FF domain 627 702 IPR036517 -
Cone20ag0242 986 ProSitePatterns WW/rsp5/WWP domain signature. 174 199 IPR001202 GO:0005515(InterPro)
Cone20ag0242 986 SUPERFAMILY WW domain 173 207 IPR036020 GO:0005515(InterPro)
Cone20ag0242 986 FunFam Pre-mRNA-processing protein 40A 163 208 - -
Cone20ag0242 986 SUPERFAMILY FF domain 486 554 IPR036517 -
Cone20ag0242 986 MobiDBLite consensus disorder prediction 907 931 - -
Cone20ag0242 986 FunFam Pre-mRNA-processing protein 40A 625 706 - -
Cone20ag0242 986 SUPERFAMILY WW domain 202 243 IPR036020 GO:0005515(InterPro)
Cone20ag0242 986 Gene3D FF domain 481 554 IPR036517 -
Cone20ag0242 986 Gene3D FF domain 625 706 IPR036517 -
Cone20ag0242 986 Gene3D FF domain 555 624 IPR036517 -
Cone20ag0242 986 FunFam Pre-mRNA-processing protein 40A 555 623 - -
Cone20ag0242 986 Coils Coil 813 872 - -
Cone20ag0242 986 Coils Coil 749 773 - -
Cone20ag0242 986 MobiDBLite consensus disorder prediction 121 194 - -
Cone20ag0242 986 SUPERFAMILY FF domain 417 479 IPR036517 -
Cone20ag0242 986 ProSiteProfiles FF domain profile. 559 614 IPR002713 -
Cone20ag0242 986 MobiDBLite consensus disorder prediction 252 295 - -
Cone20ag0242 986 MobiDBLite consensus disorder prediction 130 176 - -
Cone20ag0242 986 CDD WW 172 201 IPR001202 GO:0005515(InterPro)
Cone20ag0242 986 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 168 800 IPR039726 GO:0000398(PANTHER)|GO:0003723(PANTHER)|GO:0005685(PANTHER)|GO:0045292(InterPro)|GO:0071004(PANTHER)
Cone20ag0242 986 Gene3D FF domain 760 836 IPR036517 -
Cone20ag0242 986 ProSiteProfiles FF domain profile. 492 547 IPR002713 -
Cone20ag0242 986 FunFam Pre-mRNA-processing protein 40A 481 554 - -
Cone20ag0242 986 MobiDBLite consensus disorder prediction 826 986 - -
Cone20ag0242 986 ProSiteProfiles FF domain profile. 425 479 IPR002713 -
Cone20ag0242 986 FunFam Pre-mRNA-processing protein 40A 761 834 - -
Cone20ag0242 986 MobiDBLite consensus disorder prediction 177 194 - -
Cone20ag0242 986 Gene3D - 210 256 - -
Cone20ag0242 986 SMART ww_5 210 242 IPR001202 GO:0005515(InterPro)
Cone20ag0242 986 SMART ww_5 169 201 IPR001202 GO:0005515(InterPro)
Cone20ag0242 986 MobiDBLite consensus disorder prediction 22 50 - -
Cone20ag0242 986 FunFam pre-mRNA-processing protein 40A isoform X1 424 479 - -
Cone20ag0242 986 Gene3D FF domain 425 480 IPR036517 -
Cone20ag0242 986 Pfam FF domain 494 544 IPR002713 -
Cone20ag0242 986 Pfam FF domain 427 476 IPR002713 -
Cone20ag0242 986 Pfam FF domain 636 691 IPR002713 -
Cone20ag0242 986 MobiDBLite consensus disorder prediction 248 295 - -
Cone20ag0242 986 MobiDBLite consensus disorder prediction 1 15 - -
Cone20ag0242 986 Coils Coil 608 636 - -
Cone20ag0242 986 MobiDBLite consensus disorder prediction 1 50 - -
Cone20ag0242 986 MobiDBLite consensus disorder prediction 940 956 - -
Cone20ag0242 986 SUPERFAMILY FF domain 552 621 IPR036517 -
Cone20ag0242 986 SMART FF_2 634 695 IPR002713 -
Cone20ag0242 986 SMART FF_2 560 614 IPR002713 -
Cone20ag0242 986 SMART FF_2 492 547 IPR002713 -
Cone20ag0242 986 SMART FF_2 767 822 IPR002713 -
Cone20ag0242 986 SMART FF_2 425 479 IPR002713 -
Cone20ag0242 986 Gene3D - 156 209 - -
Cone20ag0242 986 Pfam WW domain 215 240 IPR001202 GO:0005515(InterPro)
Cone20ag0242 986 Pfam WW domain 172 199 IPR001202 GO:0005515(InterPro)
Cone20ag0242 986 ProSiteProfiles WW/rsp5/WWP domain profile. 168 201 IPR001202 GO:0005515(InterPro)
Cone20ag0242 986 ProSiteProfiles WW/rsp5/WWP domain profile. 209 242 IPR001202 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0242 K12821 - - csv:101203479 1118.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1059 Cone-Chr10:7372465 Cone20ag0242 Cone-Chr20:1054438 1.30E-199 wgd
Cone17ag0900 Cone-Chr17:7063693 Cone20ag0242 Cone-Chr20:1054438 0 wgd
Cone20ag0242 Cone-Chr20:1054438 Cone3ag1044 Cone-Chr3:29223334 1.08E-197 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g614 . Blo12g00995 . Bda03g00163 . Bpe04g00145 . . . . Cma01g01771 Cma09g00307 Car01g01380 . . Cpe06g00216 . . . . . . . . . . . . . . . . . Cone17ag0900 Cone20ag0242 Lsi04g01460 Csa04g02500 . . . . . . . Bpe05g00461 . . Sed13g1825 Cmo01g01829 Cmo09g00308 . . . Car09g00259 . Cpe02g00234 Bhi09g03198 Tan01g4668 Cmetu07g0441 . Hepe01g1848 Mch11g0381 . . . . . . . . . . Chy07g00208 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007062 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37