Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0244 ATGACGTCGTTGAAGGCAAGAACTGATGACAAAAACATGAATGGTGAGCCGGGCCATAGCAGCTGGTTAGGGTTCTCTCTCTCACCTCAGCAACAAAACTATCTTTCTCCTACTCCTCCTCCTACTCATTTGATACACAACAACATCCCAGGAATCTTCTATGGAGTTCATGATCCCTCTCCAAAACTAGAAGACTTTCTAGGAGGAGCAGGAGGAGAAGAAAGTATGGTTCTAAGCCTAGACAGCATCTCACCAGATTCTAATCGTCATAACAGAGAACAACGTCAACAGCCCTGTTTTGCCTCTGGTACAATAATGCCTTGTAATGGATTATGTCAAACCCCTTTAGACGAAGAAGGAGCAGAAAATGGAGCGAAGGAAGTTCATGAAAATTGCGTCCTAGGGTCCAACTGGTTGGTGCCCCCTCACAATCCCGATCTGGCCTATGTCCAGGTCCAACAACTCATGGTTGATGAAAACAGAGCAGCTTGTTATGGGTCTGTTAGTAATGCACTTAGCTTGTCCATGAGCCGTGGCTCTCATCAATTTAGCAGCTGTTTGATTAGCCACGGAGTTAGAGTAGTAGAGGAATGTAAAGCAACAAAAAAGAGAGGTGCTCCTCAAAAAGTAGTGGATCAAAAACAACAACGCCATGTTGTCCACAGAAAATCCATCGACACTTTCGGACAGAGAACCTCTCAGTTCAGAGGGGTCACGAGACATAGATGGACGGGTCGGTATGAGGCTCATTTGTGGGATAATAGTTGCGAGAAGGAAGGTCAAACCAGGAAAGGAAGGCAAGTTTACCTGGGAGGGTATGACGTGGAACAAAAAGCAGCCAGGGCTTATGATCTTGCAGCCATCAAGTATTGGGGTCCTTCTACTCTTATCAACTTTTCATTGGAGAATTACCAGGCCGAACTTAAGGAAATGAAGAACATGAGCCGCCACCAATATGTTTCACACTTGAGAAGGAAAAGCAGTGGATTTTCTAGGGGGGCTTCCATCTACAGAGGGGTTACAAGACATCATCAACATGGCAGATGGCAAGCTCGGATCGGCCGAGTTGCCGGAAATAAGGACCTTTATCTCGGCACTTTCAGCACACAAGAGGAAGCAGCCGAAGCATACGATGTGGCCGCAATAAGATTCCGAGGCATAACTGCCGTTACTAATTTCGATATGTCAAAATACCACGTTGATAGAATCCTGACTAGTTCTACTCTGCTTGGTGGAGAGCTTGTTAAAAAGAACCAAAGAGATCAAACCTAA 1272 45.52 MTSLKARTDDKNMNGEPGHSSWLGFSLSPQQQNYLSPTPPPTHLIHNNIPGIFYGVHDPSPKLEDFLGGAGGEESMVLSLDSISPDSNRHNREQRQQPCFASGTIMPCNGLCQTPLDEEGAENGAKEVHENCVLGSNWLVPPHNPDLAYVQVQQLMVDENRAACYGSVSNALSLSMSRGSHQFSSCLISHGVRVVEECKATKKRGAPQKVVDQKQQRHVVHRKSIDTFGQRTSQFRGVTRHRWTGRYEAHLWDNSCEKEGQTRKGRQVYLGGYDVEQKAARAYDLAAIKYWGPSTLINFSLENYQAELKEMKNMSRHQYVSHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIRFRGITAVTNFDMSKYHVDRILTSSTLLGGELVKKNQRDQT 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1080995 1083470 + Conep20aG0025500.1 Cone20ag0244 460148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0244 423 FunFam AP2-like ethylene-responsive transcription factor 335 396 - -
Cone20ag0244 423 ProSiteProfiles AP2/ERF domain profile. 234 300 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0244 423 CDD AP2 335 396 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0244 423 SUPERFAMILY DNA-binding domain 233 301 IPR016177 GO:0003677(InterPro)
Cone20ag0244 423 Pfam AP2 domain 337 386 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0244 423 Pfam AP2 domain 234 292 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0244 423 PRINTS Ethylene responsive element binding protein signature 235 246 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0244 423 PRINTS Ethylene responsive element binding protein signature 376 396 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0244 423 Gene3D AP2/ERF domain 336 396 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0244 423 Gene3D AP2/ERF domain 233 302 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0244 423 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 154 412 - -
Cone20ag0244 423 CDD AP2 233 299 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0244 423 MobiDBLite consensus disorder prediction 1 42 - -
Cone20ag0244 423 ProSiteProfiles AP2/ERF domain profile. 336 394 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0244 423 SUPERFAMILY DNA-binding domain 335 396 IPR016177 GO:0003677(InterPro)
Cone20ag0244 423 MobiDBLite consensus disorder prediction 19 42 - -
Cone20ag0244 423 FunFam AP2-like ethylene-responsive transcription factor ANT 233 302 - -
Cone20ag0244 423 SMART rav1_2 234 306 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0244 423 SMART rav1_2 336 400 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0244 Cone-Chr20:1080995 Cone6ag1474 Cone-Chr6:11740377 1.39E-113 dispersed
Cone20ag0244 Cone-Chr20:1080995 Cone4ag1633 Cone-Chr4:12351513 6.78E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45569 PF13012 MitMem_reg 1.30E-13 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0244 K09285 - vvi:100252316 412.535