Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0245 ATGGGTGGGGCTGGAAATGAGAATATGGGTTATGAACATAGAAATAATGAGGTTGTTCTGAATTGCTCATCTTCTGGAATGAGCATAAACCCTCAATCAGAAAAGCTTTCAGGAATGACAGTGGGATCAGTTTCAGTTTCCATGTACAATAAATCTTCTTGTATTGGAGCTGACCCTTTTCTTGCTTCTGGTTGGGATCACCCACTTGTTTCCTTGGGCCAAAATGACCATTTTGGACCTTCTTCTTTGGCTTCTCAGACTGAATTCTCTCACTCTGATTCTCCTTACCCTGTTCAATACCTATCCTATCCAAATTACACAGTGCCCAAACTTTCATGCTTTGGAAGTGGAAGCTTCTCAGAAATGGTTAGTTCTTTCGATCTACCAGAATGTGGTCAGATATCTAATATTGGTTGCTCTTCAAGTTATCCCCCTAATAAGGAGATGATGAGTGAAAGGGCTTCTCCAAATAATGCCCGTGTTCAAGAAGACAGGCAAATTTCAGAAGAAGGTGCTTCCGGTTCTTCACTCAACGGAAATAGACGAAAACGCCCTCTCGATTCCACTTCTCCTTTCAGTTCAAACAAGAGTGGTGAAGGGGACTTGAAGGTGGATCCTTCTATGGAAAGCTCTGATTTGCTTAAAGAACAAGATGAGAAAAAGCCAAAAACAGAGCATAATAAAGGGAAGCAAGCTAAAGAGAGTTCTAATAGTGGAGAAGAACCCAGAGAGAATAATTACATTCATGTCCGAGCCAGAAGAGGCCAAGCTACTAATAGTCATAGTCTTGCCGAAAGGGTAAGAAGGGAAAAGATCAGTGAGCGAATGAGATTGCTTCAAGAGCTTGTTCCTGGATGCAATAAGATTACTGGGAAAGCTGTAATGCTCGATGAAATTATTAATTATGTCCAGTCTTTGCAACAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACTGTCAATCCTGAACTGAACATCGATATAGACCGAATTTTATCCAAAGATATACTTCAGAGAGGCAGTAGTTCTATCCCGGGATTTGGTCCGGGATCAAGCTCATTCCAACAGTTTCCTCACAACATATTTCAGCTCAGAGGATCATTACAGAACATCCCAAACTCGTCGCATCAATTTCCTCCTTTATCTCAGGGTGTATTGGATAATGACCTTCACAGTCTTTTACAAATGGGATTTAATTCCAGTTCAGCCATTGACAATTTGGGACCAAATGGGCGTTTGAAACCAGAGCTATAA 1254 41.15 MGGAGNENMGYEHRNNEVVLNCSSSGMSINPQSEKLSGMTVGSVSVSMYNKSSCIGADPFLASGWDHPLVSLGQNDHFGPSSLASQTEFSHSDSPYPVQYLSYPNYTVPKLSCFGSGSFSEMVSSFDLPECGQISNIGCSSSYPPNKEMMSERASPNNARVQEDRQISEEGASGSSLNGNRRKRPLDSTSPFSSNKSGEGDLKVDPSMESSDLLKEQDEKKPKTEHNKGKQAKESSNSGEEPRENNYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNIDIDRILSKDILQRGSSSIPGFGPGSSSFQQFPHNIFQLRGSLQNIPNSSHQFPPLSQGVLDNDLHSLLQMGFNSSSAIDNLGPNGRLKPEL 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1087174 1089153 + Conep20aG0025600.1 Cone20ag0245 460149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0245 417 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 256 306 IPR011598 GO:0046983(InterPro)
Cone20ag0245 417 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 254 323 IPR036638 GO:0046983(InterPro)
Cone20ag0245 417 FunFam Basic helix-loop-helix transcription factor 253 325 - -
Cone20ag0245 417 Gene3D - 253 327 IPR036638 GO:0046983(InterPro)
Cone20ag0245 417 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 132 375 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cone20ag0245 417 MobiDBLite consensus disorder prediction 202 245 - -
Cone20ag0245 417 Pfam Helix-loop-helix DNA-binding domain 259 307 IPR011598 GO:0046983(InterPro)
Cone20ag0245 417 SMART finulus 262 312 IPR011598 GO:0046983(InterPro)
Cone20ag0245 417 MobiDBLite consensus disorder prediction 142 197 - -
Cone20ag0245 417 MobiDBLite consensus disorder prediction 142 245 - -
Cone20ag0245 417 CDD bHLH_AtBPE_like 246 331 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0995 Cone-Chr13:8388473 Cone20ag0245 Cone-Chr20:1087174 2.21E-43 dispersed
Cone19ag0986 Cone-Chr19:7438204 Cone20ag0245 Cone-Chr20:1087174 2.88E-39 dispersed
Cone20ag0245 Cone-Chr20:1087174 Cone6ag0499 Cone-Chr6:2493438 9.47E-44 dispersed
Cone17ag0902 Cone-Chr17:7112047 Cone20ag0245 Cone-Chr20:1087174 6.14E-278 wgd
Cone20ag0245 Cone-Chr20:1087174 Cone4ag1634 Cone-Chr4:12358324 7.31E-89 wgd
Cone20ag0245 Cone-Chr20:1087174 Cone7ag1197 Cone-Chr7:8908009 1.14E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45570 PF07859 Abhydrolase_3 7.70E-06 CL0028 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0245 - - - 0.0