Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone20ag0246 | ATGGCGCCTTCTTTTGATTGGTGGGAGAGGAAGAAGGAGAAGAATAGCCACAGAGGAACTCCAGTCGTCGTGAAAATGGAGAATCCTAACTGGTCCATGGTCGAGCTTTCCCTCCCTTCTGACGAAGAACTTCACACACCGGACACGCCGAGTCGGCTCGGAGATAAATCCCGAGGCAGGAAGAACAACGCTAAGCAGCTCACGTGGGTCCTCTTCCTCAGAGCTCACAAAGCTGCAGGCTGTTTAAGCTCCATTGCCGCCACAATCGCTGGACTGGCCTCCGCCGTAAAACGCCGCCTCGCTTCTTGTCGCACCGACGCCGACATCGATTCCACTACCGTCGCCGGCGGGGGAAGAGAGAAGGAGAATCCCGCCGTGAAGACCAGGTTCTATTCGTTCATCAAGGTGTTCTTATGGGTATCGCTGATTCTGTTAGGGTTTGAGATAGCAGCGTATTGCAAAGGATGGCATTTCGGAGCTCCGAATCTTCAATTGGATCGTATATGGGCGGCCCAATTTGGTGTCAAGGGCGTCTTCGATTGGGCTTACTCTAAATGGATCATGCTTCGGGTCGAATATTTAGCTCCACCACTCCAATTCCTAGCCAATGTGTGTATTATACTCTTCCTGATTCAGAGTGTAGATAGACTTGTTCTTTGCTTGGGCTGTTTCTGGATCAAGTTTAAGAAGATCAAACCGGTCCCGAAAGGAGCTCCCCTTGATATTGAATCTGGCGAAAATGGTTACTTCCCTATGGTCCTTGTTCAGATCCCCATGTGCAACGAAAAAGAGGTTTATCAGCAATCAATTGGTGCTGTATGCAATTTAGACTGGCCGAAATCGAAGATGCTAATACAAGTTCTTGATGATTCAGACGATCCGACAGCTCAGTTACTGATCAAAGAAGAGGTTCGGAAATGGCAGCAAGATGGGGCCAACATAGTGTACAGGCATAGGGTGATTAGAGAAGGGTATAAAGCAGATTTTCTCAAAAAAACAGTCCCTCACTTTCAGGATAACGAGGAGCTAGGATTGGTTCAAGCAAGATGGTCATTTGTGAACAAAGATGAGAACTTGCTAACAAGGCTACAGAATATTAACTTGGCATTCCATTTTGAAGTAGAGCAGCAAGTAAATGGAGTGTACTTGAATTTCTTCGGATTCAATGGAACAGCTGGAGTATGGAGGATTAAGGCCTTAGAAGAGTCTGGTGGGTGGTTGGAGAGGACCACTGTTGAGGATATGGACATTGCAGTCCGGGCCCATCTCCATGGATGGAAGTTCATATTCCTCAATGATGTAGAGTGCCAATGTGAATTGCCAGAATCTTATGAAGCTTACCGGAAACAGCAACATAGATGGCATTCCGGGCCGATGCAGTTGTTTCGCTTTTGTTTACCCGCCATTATTAGAGCTAAGATTAGCATATGGAAGAAACTGAATATGATCTTCCTCTTCTTCCTCCTGAGAAAACTGATCCTCCCCTTCTATTCATTCACCCTCTTCTGCATAATTCTCCCCATGACAATGTTTGTTCCAGAAGCCGAATTACCCGCTTGGGTCGTGTGCTATATCCCTGCCACCATGTCCTTTCTAAATATCCTCCCCGCCCCTAAATCCTTCCCTTTCATTGTTCCCTATCTTCTCTTTGAAAACACAATGTCAGTCACTAAGTTCAATGCCATGGTTTCTGGCCTCTTTCAGCTAGGAAGTGCTTATGAATGGGTTGTGACCAAAAAATCAGGCCGCTCATCTGAGGGCAATCTTGTCTCTTTGGTCGAGAAAGAAGAGCAGAAGCTTCAGAGAGGGGTTTCGGTCCCCAATCTTGGTGAGTTGGAAGAGAAGGTTGTAAATCAGAAGCAGCAAAAGGGTTTGAAGAAAAAGCATAATAGGATATATATGAAGGAGTTGGCTTTGGCTTTTTTGCTTCTGACTGCTGCTACTAGGAGTCTGCTGTCGGCTCAAGGGATCCATTTCTACTTCTTGCTTTTCCAAGGGGTTTCCTTCTTGCTTGTGGGTTTGGATTTGATCGGTGAGCAAGTTGATTGA | 2049 | 46.36 | MAPSFDWWERKKEKNSHRGTPVVVKMENPNWSMVELSLPSDEELHTPDTPSRLGDKSRGRKNNAKQLTWVLFLRAHKAAGCLSSIAATIAGLASAVKRRLASCRTDADIDSTTVAGGGREKENPAVKTRFYSFIKVFLWVSLILLGFEIAAYCKGWHFGAPNLQLDRIWAAQFGVKGVFDWAYSKWIMLRVEYLAPPLQFLANVCIILFLIQSVDRLVLCLGCFWIKFKKIKPVPKGAPLDIESGENGYFPMVLVQIPMCNEKEVYQQSIGAVCNLDWPKSKMLIQVLDDSDDPTAQLLIKEEVRKWQQDGANIVYRHRVIREGYKADFLKKTVPHFQDNEELGLVQARWSFVNKDENLLTRLQNINLAFHFEVEQQVNGVYLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRFCLPAIIRAKISIWKKLNMIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSAYEWVVTKKSGRSSEGNLVSLVEKEEQKLQRGVSVPNLGELEEKVVNQKQQKGLKKKHNRIYMKELALAFLLLTAATRSLLSAQGIHFYFLLFQGVSFLLVGLDLIGEQVD | 682 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 1089883 | 1093180 | - | Conep20aG0025700.1 | Cone20ag0246 | 460150 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone20ag0246 | 682 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Cone20ag0246 | 682 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 250 | 495 | IPR029044 | - | |
| Cone20ag0246 | 682 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Cone20ag0246 | 682 | Pfam | Glycosyl transferase family group 2 | 327 | 512 | IPR001173 | - | |
| Cone20ag0246 | 682 | MobiDBLite | consensus disorder prediction | 41 | 60 | - | - | |
| Cone20ag0246 | 682 | PANTHER | GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 | 328 | 681 | - | GO:0005794(PANTHER)|GO:0016757(PANTHER) | |
| Cone20ag0246 | 682 | MobiDBLite | consensus disorder prediction | 37 | 60 | - | - | |
| Cone20ag0246 | 682 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 244 | 326 | IPR029044 | - | |
| Cone20ag0246 | 682 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 327 | 439 | IPR029044 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone20ag0246 | Cone-Chr20:1089883 | Cone4ag1865 | Cone-Chr4:13366518 | 1.64E-287 | dispersed | |
| Cone17ag0903 | Cone-Chr17:7115534 | Cone20ag0246 | Cone-Chr20:1089883 | 0 | wgd | |
| Cone20ag0246 | Cone-Chr20:1089883 | Cone4ag1635 | Cone-Chr4:12361036 | 0 | wgd | |
| Cone20ag0246 | Cone-Chr20:1089883 | Cone7ag1317 | Cone-Chr7:9641464 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone20ag0246 | - | - | - | 0.0 |