Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0247 ATGACGATTCTGCCCTCTTCGGATCGAAAGTACCGCCGAAGCCCAAGGAAGCACCTGCTACAGGAAAAATATGGCGACTGCGAGTCTGCGGAGCCGCTAGAGGTGGGGTTTGGCGGCGCCTCTTTTTCAGGAGCGGTGTTTAATCTCTCGACTACCGTCGTCGGCGCCGGAATCATGGCTCTCCCCGCCGCCGTTAAGCAATTAGGAATGATTCCTGGCCTGATCATGATCGTCTTGGGCTCGATGCTGACGGAGTTTTCCATCGATTTGATCCTGAGATTCAGCCGTGCTTCCAAGTCCGTCACGTACTCTGGCGTTGTCAGTGACGCGTTCGGTGGGACCGGACGGACTCTCTTGCAGATCTGCATCGTTGTCAACAACTTGGGCCTGCTCGTGGTCTACATGATTATCATCGGAGATGTGTTATCAGGGTCGTGGTCAGATGGGGTCCACCACTCAGGTGTGATTGAGGAATGGGTGGGTAGCCATTGGTGGAGCAGGCGATCCTTCTTAATGATCCTCACGACCCTTCTAGTCTTCGCGCCTCTCATTTCTTTCAAACGTGTCGATTCATTGAGATACACGTCAGCATTATCGGTAGGACTAGCCATAGTATTTGTGGCAATAACAGCTGGAGTGGCAATAGCTAGATTACTCGACGGCAGCGTCCAATTCCCCCGTTTAACGCCGGAATTCACCGATCAAGCCTCCTTCTGGAAGCTCTTCACAACCATTCCTGTTCTAGTCACCGCCTATATTTGCCACCATAACATCCATCCGATAGGCAACGAGCTCAAAGACTCAACACAAATCAAATCCGTCGTTAAAATATCACTCAGACTATGCTGCATTGTCTACATGGCAACGAGCTTTTTCGGAATTCTCCTATTTGGCGACGGAACATTAGACGATGTGCTTGCTAATTTCGATGGAGATCTTGGAATCCCATACAGCTCATTGCTTGACGATATAGTTAGAGAGATTCTTTTTCGTGACTGTGGCTTTGATGGTTTTAATTTTTACCGGCGCTAA 1032 49.71 MTILPSSDRKYRRSPRKHLLQEKYGDCESAEPLEVGFGGASFSGAVFNLSTTVVGAGIMALPAAVKQLGMIPGLIMIVLGSMLTEFSIDLILRFSRASKSVTYSGVVSDAFGGTGRTLLQICIVVNNLGLLVVYMIIIGDVLSGSWSDGVHHSGVIEEWVGSHWWSRRSFLMILTTLLVFAPLISFKRVDSLRYTSALSVGLAIVFVAITAGVAIARLLDGSVQFPRLTPEFTDQASFWKLFTTIPVLVTAYICHHNIHPIGNELKDSTQIKSVVKISLRLCCIVYMATSFFGILLFGDGTLDDVLANFDGDLGIPYSSLLDDIVREILFRDCGFDGFNFYRR 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1095165 1098130 - Conep20aG0025800.1 Cone20ag0247 460151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0247 343 PANTHER AMINO ACID TRANSPORTER 38 313 - GO:0003333(PANTHER)|GO:0015179(PANTHER)
Cone20ag0247 343 Pfam Transmembrane amino acid transporter protein 40 311 IPR013057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0247 K14207 - - vvi:100264342 498.819
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0247 Cone-Chr20:1095165 Cone2ag0476 Cone-Chr2:2569561 2.78E-130 dispersed
Cone17ag0904 Cone-Chr17:7122949 Cone20ag0247 Cone-Chr20:1095165 2.88E-213 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g604 . Blo12g01000 . Bda03g00158 . Bpe04g00140 . . . . . Cma09g00312 . . . Cpe06g00221 . . . . . . . . . . . . . . . . . Cone17ag0904 Cone20ag0247 Lsi04g01453 Csa04g02507 . . . . . . . . . . Sed06g0897 . Cmo09g00312 . . . Car09g00264 . . Bhi09g03189 Tan01g4658 Cmetu05g1084 . Hepe01g1853 Mch11g0388 . . . . . . . . . . Chy07g00214 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone10ag0570 . 38 472 Amino Acid/Auxin Permease AAAP Family AT5G16740 60.7 1.8e-138 490.0
Cone3ag0596 . 39 478 Amino Acid/Auxin Permease AAAP Family AT5G16740 60.0 7.5e-137 484.6
Cone10ag0012 . 40 466 Amino Acid/Auxin Permease AAAP Family AT2G41190 65.8 3.2e-158 555.8
Cone3ag0018 . 29 301 Amino Acid/Auxin Permease AAAP Family AT2G41190 54.0 9.1e-73 271.9
Cone2ag0477 . 3 462 Amino Acid/Auxin Permease AAAP Family AT3G30390 71.7 1.7e-182 636.3
Cone2ag0476 . 41 459 Amino Acid/Auxin Permease AAAP Family AT3G30390 72.8 2.6e-175 612.5
Cone11ag0344 . 8 461 Amino Acid/Auxin Permease AAAP Family AT3G30390 69.6 1.1e-170 597.0
Cone9ag0513 . 23 457 Amino Acid/Auxin Permease AAAP Family AT3G30390 64.6 1.3e-158 557.0
Cone18ag1158 . 3 462 Amino Acid/Auxin Permease AAAP Family AT3G30390 61.8 2.8e-145 512.7
Cone17ag0904 . 19 450 Amino Acid/Auxin Permease AAAP Family AT3G30390 57.6 5.1e-139 491.9
Cone20ag0247 . 19 326 Amino Acid/Auxin Permease AAAP Family AT3G30390 59.1 1.1e-98 357.8
Cone4ag0539 . 43 433 Amino Acid/Auxin Permease AAAP Family AT3G28960 60.9 6.3e-141 498.0
Cone7ag0513 . 1 346 Amino Acid/Auxin Permease AAAP Family AT3G28960 61.3 8.5e-122 434.5
Cone2ag0477 . 19 457 Amino Acid/Auxin Permease AAAP Family AT5G38820 68.9 7.0e-173 604.4
Cone2ag0476 . 42 459 Amino Acid/Auxin Permease AAAP Family AT5G38820 69.0 7.5e-167 584.3
Cone11ag0344 . 18 456 Amino Acid/Auxin Permease AAAP Family AT5G38820 67.8 2.7e-164 575.9
Cone9ag0513 . 23 457 Amino Acid/Auxin Permease AAAP Family AT5G38820 63.4 1.8e-157 553.1
Cone18ag1158 . 18 457 Amino Acid/Auxin Permease AAAP Family AT5G38820 61.4 7.5e-143 504.6
Cone17ag0904 . 37 451 Amino Acid/Auxin Permease AAAP Family AT5G38820 57.1 8.9e-136 481.1
Cone20ag0247 . 37 326 Amino Acid/Auxin Permease AAAP Family AT5G38820 60.3 8.7e-99 358.2
Cone17ag0245 . 1 487 Amino Acid/Auxin Permease AAAP Family AT1G80510 72.0 9.1e-187 650.6
Cone11ag1049 . 100 587 Amino Acid/Auxin Permease AAAP Family AT5G02180 50.8 3.5e-126 449.5
Cone1ag1364 . 50 488 Amino Acid/Auxin Permease AAAP Family AT5G02180 52.9 1.1e-116 417.9
Cone18ag0526 . 1 483 Amino Acid/Auxin Permease AAAP Family AT2G39130 68.1 6.4e-180 627.9
Cone11ag1049 . 1 522 Amino Acid/Auxin Permease AAAP Family AT2G39130 62.0 2.1e-170 596.3
Cone1ag1364 . 5 474 Amino Acid/Auxin Permease AAAP Family AT2G39130 63.4 2.1e-162 569.7
Cone4ag0539 . 98 432 Amino Acid/Auxin Permease AAAP Family AT5G15240 59.8 1.5e-108 390.2
Cone7ag0513 . 14 345 Amino Acid/Auxin Permease AAAP Family AT5G15240 58.6 2.1e-105 379.8
Cone13ag0062 . 75 306 Amino Acid/Auxin Permease AAAP Family AT5G15240 50.4 8.5e-59 224.9
Cone5ag0160 . 1 430 Amino Acid/Auxin Permease AAAP Family AT3G56200 62.7 7.4e-140 494.6
Cone18ag0526 . 1 483 Amino Acid/Auxin Permease AAAP Family AT3G54830 65.2 2.1e-168 589.7
Cone11ag1049 . 1 536 Amino Acid/Auxin Permease AAAP Family AT3G54830 59.2 3.0e-162 569.3
Cone1ag1364 . 3 491 Amino Acid/Auxin Permease AAAP Family AT3G54830 57.5 5.3e-151 531.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011762 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30