Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0258 ATGGCTCGTATCTCCACACTCGCTCTCTTTCTCTTCCTGACCGTCTTCGATTTGGCTTCATCGAATCGAGATCTCTCCGGCGATGTTCTAAGATTACCGTCGGAAGCTTCGAGGTTCTTCAGCCGAGCTGATGCTGATGATAACGATGACGACGCCGTAGGGACTCGTTGGGCGGTCCTCATCGCCGGCTCTAACGGTTACTGGAATTACAGGCATCAGGCTGATGTTTGTCATGCTTATCAACTGCTGAGAAAAAACGGATTAAAAGATGAAAACATCATCGTGTTCATGTATGATGACATTGCTTACAATAGTGAGAATCCAAGACCTGGAGTCATCATCAACAGTCCGAATGGTGATGATGTTTATAAAGGTGTACCAAAGGATTATACTGGGGATGATGTTACTGTTAATAACTTCTTTGCTGCTATCCTCGGAAATAAGACTGCTCTTACAGGGGGTAGTGGAAAGGTTTTGGACACTGGTCCTAATGATCATATTTTCATATACTATACTGATCATGGTGGTCCTGGAGTTCTTGGTATGCCTACTAGTCCTTACATTTATGCTAACGATCTGATAGAAGTTTTAATGAAGAAACATGCTTCTGGAACTTACAAAAGTTTGGTATTTTATCTGGAAGCATGTGAATCTGGAAGTATATTTGAGGGTCTTCTTCCGGAAGGTTTGGATATCTATGCAACAACTGCATCAAATGCAGTTGAGAGCAGTTGGGGAACTTATTGTCCGGGCGACTATCCAAGTCCTCCCCCGGAATATGAAACTTGCTTGGGTGACTTGTATAGCGTTGCTTGGATGGAAGACAGTGATATACACAATTTGAGGACAGAATCTTTACACCAGCAATTTGAACTAGTGAAGAAGAGAACTCTAAACGACAACTCCGGTTTTGGTTCCCACGTCATGCAATATGGTGATAAGGGAATAAGCAAAAACCATTTGTTCTTGTATCTGGGAACAGATCCTGCAAATGATAACTACACTTTTGTCGAAGAGAACTCCTTGACTCCACCCACAAAAGCCGTCAACCAAAGGGATGCTGATCTCATCCATTTCTGGGACAAGTTCCGCAAAGCTCCAGAGGGATCCACAAGAAAATCCGAAGCTCAGAAGCAGTTTCTCGAAGCAATGTCACATAGAATGCAGATAGACAAGAGCATAAAACTAATCGGACAGCTCTTATTCGGAATGGAAAAAGGTCCAGAGGTGCTCGACACCGTTCGATATGCCGGACAGCCCCTCGTCGACGACTGGGAATGCCTTAAAAGCATGGTGAGAACATATGAGAGTCATTGCGGATTGATATCTCAGTACGGGATGAAGCACATGAGATCATTTGCAAACATATGCAATGCTGGTATTAAGAAAGAGCAGCTCTCTGATGCTTCAGCTCAAGCCTGTGTCAATGTCCTCTCTCTTCACAGTGGATTCAGTGATTGA 1461 43.74 MARISTLALFLFLTVFDLASSNRDLSGDVLRLPSEASRFFSRADADDNDDDAVGTRWAVLIAGSNGYWNYRHQADVCHAYQLLRKNGLKDENIIVFMYDDIAYNSENPRPGVIINSPNGDDVYKGVPKDYTGDDVTVNNFFAAILGNKTALTGGSGKVLDTGPNDHIFIYYTDHGGPGVLGMPTSPYIYANDLIEVLMKKHASGTYKSLVFYLEACESGSIFEGLLPEGLDIYATTASNAVESSWGTYCPGDYPSPPPEYETCLGDLYSVAWMEDSDIHNLRTESLHQQFELVKKRTLNDNSGFGSHVMQYGDKGISKNHLFLYLGTDPANDNYTFVEENSLTPPTKAVNQRDADLIHFWDKFRKAPEGSTRKSEAQKQFLEAMSHRMQIDKSIKLIGQLLFGMEKGPEVLDTVRYAGQPLVDDWECLKSMVRTYESHCGLISQYGMKHMRSFANICNAGIKKEQLSDASAQACVNVLSLHSGFSD 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1155359 1158008 - Conep20aG0026900.1 Cone20ag0258 460162

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0258 486 PIRSF AE 1 486 IPR043577 GO:0004197(InterPro)|GO:0051603(InterPro)
Cone20ag0258 486 PIRSF Legumain 1 486 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Cone20ag0258 486 Pfam Peptidase C13 family 56 326 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Cone20ag0258 486 Gene3D - 351 482 IPR046427 -
Cone20ag0258 486 Gene3D - 54 350 - -
Cone20ag0258 486 FunFam Vacuolar-processing enzyme beta-isozyme 54 350 - -
Cone20ag0258 486 CDD legumain_C 353 474 IPR048501 -
Cone20ag0258 486 PRINTS Hemoglobinase (C13) cysteine protease signature 206 222 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Cone20ag0258 486 PRINTS Hemoglobinase (C13) cysteine protease signature 129 144 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Cone20ag0258 486 PRINTS Hemoglobinase (C13) cysteine protease signature 82 111 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Cone20ag0258 486 PRINTS Hemoglobinase (C13) cysteine protease signature 157 176 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Cone20ag0258 486 PRINTS Hemoglobinase (C13) cysteine protease signature 57 81 IPR001096 GO:0006508(InterPro)|GO:0008233(InterPro)
Cone20ag0258 486 PANTHER HEMOGLOBINASE FAMILY MEMBER 43 474 IPR001096 GO:0004197(PANTHER)|GO:0006508(InterPro)|GO:0006624(PANTHER)|GO:0008233(InterPro)|GO:0051603(PANTHER)
Cone20ag0258 486 FunFam Vacuolar-processing enzyme beta-isozyme 351 478 - -
Cone20ag0258 486 Pfam Legumain, prodomain 378 474 IPR048501 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0258 K01369 - - rcu:8275625 813.913
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0258 Cone-Chr20:1155359 Cone7ag1300 Cone-Chr7:9571417 4.09E-275 dispersed
Cone20ag1401 Cone-Chr20:8939056 Cone20ag0258 Cone-Chr20:1155359 5.37E-182 transposed
Cone20ag0258 Cone-Chr20:1155359 Cone4ag1649 Cone-Chr4:12432892 2.81E-285 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g53 . . . . Bpe02g01534 . . . Cmo05g00111 Cmo12g00569 . Cma05g00105 . Car12g00576 Sed08g1757 Cpe07g00549 . Bhi04g00491 Tan02g1654 Cmetu02g1720 . Hepe08g1379 . Lcy13g2174 . . . . . . . Cone4ag1649 Cone7ag1300 . Cone20ag0258 . . . . Blo17g00296 Blo18g00291 Bda01g01323 Bda13g01611 Bpe14g00254 . Bma01g00929 . . . . . Cma12g00628 . Car05g00091 Cpe11g00085 . . . . . . . . . . . . . . . Lsi08g01572 Csa02g01849 Chy03g01635 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005098 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 41