Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0262 ATGAACGGCGGTGGCGAGGGGGTTCTGCAGCCACTGGAGTGGAAGTTCTCTCAGGTATTTGGAGAACGGACGGCCGGTGAAGAAGTTCAGGAAGTCGATATCATATCTGCTATTGAATTCGATAAAACCGGGGACCACCTTGCAACTGGGGATCGTGGGGGTCGGGTGGTTTTATTCGAAAGAACTGATACAAGGGAGCATGGTGGGAACTTGAAAGATCTGGAGAGCATGGATTGTTCAATCAGTAAGCATCCCGAGTTCCGTTATAAAACTGAGTTTCAGAGCCATGAGCCTGAGTTTGACTATCTTAAGAGCTTGGAAATTGAGGAGAAAATCAACAAGATTAAATGGTGCCAGACAGCTAATGGCGCCTTGTTTCTTCTCTCCACTAATGACAAGACCATCAAATTTTGGAAGGTGCAAGAGAAGAAGGTCAAGAAAGTAAGTGAAATGAATCTGAATCCTGTAAAAGCGAATGGTCCAGCTGTGGGTTCAAGTAAACCAACTAGTGACAAACCCTATGCGAATGGAGGATATGACTTGAGCAATGATGCTTCATTCCCTTGTGGGGGTGCCTCGATGCTGCGCTTGCCTGTGGTGATAGGTGTCGAGACAAGTCCTGTGGCTAGATGTCGAAGAATCTATGCCCACGCCCACGACTATCATATCAATTCCATTTCGAATAACAGTGATGGTCAAACTTTCATATCAGCTGATGATCTACGGATAAATCTTTGGAACTTAGAAATTAGCAATCAAAGTTTTAACATTGTTGATGTGAAGCCTGCTAATATGGAAGATCTTACTGAGGTCATAACTTCAGCAGAATTTCACCCTTCTCACTGTAATACATTGGCGTACAGTAGCTCAAAAGGCTCTCTCCGTCTTATTGATTTGAGGCAGTCAGCTTTATGTGATAGCCATAGCAAATTATTTGAGGAACAGGAAGCAGCTAGTTCAAAATCATTTTTCACAGAGATCATTGCCTCAATTTCGGATATCAAGTTTTTCAAGGATGGAAGGCATATACTTAGCAGGGACTATATGACACTAAAGCTGTGGGACATAAACATGGATTCTGGCCCAGTTTCAACCTTCCAGGTGCATGAATATCTAAGACCAAAGCTCTGTGATTTATATGAAAATGATTCCATCTACGACAAATTTGAGTGCTGTCTAAGTGGAGATGGACGTCGAGTAGCTTCTGGTTCTTACAGCAACCTGTTCCGTGTGTTTGGTTGTTCCAAAGGCAGCACTGATGCGTCGACTTTGGAAGCAAGTAAAAACCCCATGAGAAGACAAGTCCAAAGTCCTTCATGGCCTGCTGCTAGATCTCTTGGCTCCCTTCCGCGTGTTCTCCGACGAGGAGGCGATAGCTCTCCAAGTGACACAAATGGAAATGTGTTCGACTTCACAACAAAGTTGCTACATCTAGCGTGGCATCCAACTGAGAATGCACTTGCCTGTGCTGCGTCAAATAGCCTTTACATGTATTATGCATAA 1503 44.05 MNGGGEGVLQPLEWKFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRVVLFERTDTREHGGNLKDLESMDCSISKHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQTANGALFLLSTNDKTIKFWKVQEKKVKKVSEMNLNPVKANGPAVGSSKPTSDKPYANGGYDLSNDASFPCGGASMLRLPVVIGVETSPVARCRRIYAHAHDYHINSISNNSDGQTFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPSHCNTLAYSSSKGSLRLIDLRQSALCDSHSKLFEEQEAASSKSFFTEIIASISDIKFFKDGRHILSRDYMTLKLWDINMDSGPVSTFQVHEYLRPKLCDLYENDSIYDKFECCLSGDGRRVASGSYSNLFRVFGCSKGSTDASTLEASKNPMRRQVQSPSWPAARSLGSLPRVLRRGGDSSPSDTNGNVFDFTTKLLHLAWHPTENALACAASNSLYMYYA 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1167402 1172567 - Conep20aG0027300.1 Cone20ag0262 460166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0262 500 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 99 113 IPR018067 -
Cone20ag0262 500 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 115 143 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cone20ag0262 500 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 386 412 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cone20ag0262 500 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 332 359 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cone20ag0262 500 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 86 114 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cone20ag0262 500 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 39 59 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cone20ag0262 500 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 275 303 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cone20ag0262 500 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 219 246 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cone20ag0262 500 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 360 385 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cone20ag0262 500 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 247 274 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cone20ag0262 500 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 304 331 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cone20ag0262 500 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 469 498 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cone20ag0262 500 MobiDBLite consensus disorder prediction 156 175 - -
Cone20ag0262 500 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 12 500 IPR000009 GO:0000159(PANTHER)|GO:0000159(InterPro)|GO:0005829(PANTHER)|GO:0019888(InterPro)|GO:0019888(PANTHER)
Cone20ag0262 500 SMART WD40_4 99 139 IPR001680 GO:0005515(InterPro)
Cone20ag0262 500 SMART WD40_4 317 355 IPR001680 GO:0005515(InterPro)
Cone20ag0262 500 SMART WD40_4 258 298 IPR001680 GO:0005515(InterPro)
Cone20ag0262 500 SMART WD40_4 208 247 IPR001680 GO:0005515(InterPro)
Cone20ag0262 500 SMART WD40_4 359 413 IPR001680 GO:0005515(InterPro)
Cone20ag0262 500 SMART WD40_4 25 60 IPR001680 GO:0005515(InterPro)
Cone20ag0262 500 SMART WD40_4 462 499 IPR001680 GO:0005515(InterPro)
Cone20ag0262 500 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 217 231 IPR018067 -
Cone20ag0262 500 PIRSF PPA2_B55 6 500 IPR000009 GO:0000159(InterPro)|GO:0019888(InterPro)
Cone20ag0262 500 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 30 187 - -
Cone20ag0262 500 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 204 307 - -
Cone20ag0262 500 Pfam WD domain, G-beta repeat 217 247 IPR001680 GO:0005515(InterPro)
Cone20ag0262 500 SUPERFAMILY WD40 repeat-like 33 493 IPR036322 GO:0005515(InterPro)
Cone20ag0262 500 Gene3D - 70 498 IPR015943 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0262 K04354 - - mdm:103440623 825.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0262 Cone-Chr20:1167402 Cone4ag0932 Cone-Chr4:7760786 1.07E-294 dispersed
Cone17ag0919 Cone-Chr17:7217623 Cone20ag0262 Cone-Chr20:1167402 1.04E-255 wgd
Cone17ag0114 Cone-Chr17:602901 Cone20ag0262 Cone-Chr20:1167402 9.16E-282 wgd
Cone20ag0262 Cone-Chr20:1167402 Cone20ag1295 Cone-Chr20:8435313 8.90E-282 wgd
Cone20ag0262 Cone-Chr20:1167402 Cone7ag1207 Cone-Chr7:8977939 2.64E-288 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g64 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag0919 Cone20ag0262 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001053 3 3 4 2 3 2 4 2 2 2 2 2 4 2 2 3 2 5 4 2 2 2 2 2 2 2 2 5 3 3 80