Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0264 ATGATAGAGAGAGACTTATTTAACGGTCAATCCCATATAACCCCAGACCAACTCATTTCCAATCCTCTAGATTTTAACCAGCAAAGCCATCTCAACGAAGTTCTACCAATCCTTTCAAATCTCCAAGTAGAACCCGTTCTTGATTCCGATCCGATAACATCATGCAGACAGAATGTTCTAGAGCACTTCTCCGGTTTCAGTTCGAGTTACCTCGAACAACATGACCCAGAAAACACAACATTCTTAGTCCCTCAAGCTCTTCCATTACAAACCATTAGAACTTGTGCATCTAATGGTCCAAATTCTCTGTTCGGATACGATCAGGTTCTAAGTAATTTAACTGGATGGTCCGATAACAGTTACTTCTCCTCCTCGTCTAATTTATTGAACAAGCTTTCTCTCAGCCTAGCGACTACCCTACCAAGTCAAGACCATTGCCAAGAATTAATTGGCAAGGAGCTTTCTTACCGGGCTTCTAGATTCTGTCCGGCTTTATTGGGATCAAAATATCTCTCCATTGTCCAAGAGATTCTCTCTCAAGTCACAAGCTATTCGCTTGAAAAAGGTATAGTTCGCATGCGCTCTTCGACACCTACTGTGGTGGGATCCACGCCGTCCAATTTCGAGATAATTAATAAATCCGAAGCAAGGAAAACAAAACTTCTTACCCTTCTACAATTGGTTGATGACCGTTACAACCAATGTTTGGATGAGATTCATACGGTTATATCTGCGTTCCATGCTGCGACCGATTTGGACCCACAATTGCACGCCCGATTTGCTCTGCAAAGTGTTTCTTTTGTGTATAGGGACTTGAGAGAGAGGATTAGTAATCAGATTCTTTCTATGGGAGAGCATCCTTACAGGTCATCATCGTCTGGGGGAGAGAATGGAAGAATGTTTGATACATCTTTCATTGAGAAGCAGTGGGCCCTGCAGCAGCTGAAAAGAAAAGATCAGCAGTTGTGGAGGCCGCAACGAGGCCTGCCAGAGAGATCCGTCTCGGTTTTACGGGCTTGGATGTTCCAAAACTTTCTTCATCCGTATCCCAAGGATACTGAGAAGCATTTACTAGCCGTGAAGAGTGGATTGACTAGAAGTCAAGTGTCCAATTGGTTTATAAATGCTCGGGTGCGGTTATGGAAGCCGATGATCGAAGAAATGTATGCCGAGATGAATCGAAGGTCGGATCAGAACGAAGGGGAAGAAGCTGGAAACAATCAGAGAAGCCAGATGAGTATCAGTGATACAAGATTTTGGGTGAAAAGAAGTTTGAGTTGA 1281 43.4 MIERDLFNGQSHITPDQLISNPLDFNQQSHLNEVLPILSNLQVEPVLDSDPITSCRQNVLEHFSGFSSSYLEQHDPENTTFLVPQALPLQTIRTCASNGPNSLFGYDQVLSNLTGWSDNSYFSSSSNLLNKLSLSLATTLPSQDHCQELIGKELSYRASRFCPALLGSKYLSIVQEILSQVTSYSLEKGIVRMRSSTPTVVGSTPSNFEIINKSEARKTKLLTLLQLVDDRYNQCLDEIHTVISAFHAATDLDPQLHARFALQSVSFVYRDLRERISNQILSMGEHPYRSSSSGGENGRMFDTSFIEKQWALQQLKRKDQQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDTEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNRRSDQNEGEEAGNNQRSQMSISDTRFWVKRSLS 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1178108 1180570 - Conep20aG0027500.1 Cone20ag0264 460168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0264 426 ProSiteProfiles 'Homeobox' domain profile. 320 383 IPR001356 GO:0003677(InterPro)
Cone20ag0264 426 Gene3D - 326 405 - -
Cone20ag0264 426 SMART HOX_1 323 387 IPR001356 GO:0003677(InterPro)
Cone20ag0264 426 CDD homeodomain 323 384 IPR001356 GO:0003677(InterPro)
Cone20ag0264 426 Pfam Associated with HOX 165 277 IPR006563 -
Cone20ag0264 426 SMART prehox3 159 278 IPR006563 -
Cone20ag0264 426 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 125 409 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone20ag0264 426 Pfam Homeobox KN domain 340 379 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone20ag0264 426 SUPERFAMILY Homeodomain-like 325 393 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0264 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0264 Cone-Chr20:1178108 Cone3ag0138 Cone-Chr3:763964 2.25E-47 dispersed
Cone17ag0921 Cone-Chr17:7231823 Cone20ag0264 Cone-Chr20:1178108 8.20E-251 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g68 . . . . Bpe02g01536 . . . Cmo05g00107 Cmo12g00574 . Cma05g00100 . Car12g00582 . Cpe07g00555 . Bhi04g00500 . . . Hepe08g1385 . Lcy13g2179 . . . . . . . . . Cone17ag0921 Cone20ag0264 . . . . Blo17g00292 . Bda01g01326 Bda13g01607 Bpe14g00258 . Bma01g00927 . . . . . Cma12g00634 . Car05g00086 Cpe11g00080 . . . . . . . . . . . . . . . Lsi08g01577 Csa02g01843 Chy03g01640 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003901 2 8 1 1 2 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45571 PF08235 LNS2 6.00E-95 CL0137 Cone TF