Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0268 ATGTCGAAAATGAAGCATCTGCTAAGAAAGCTTCACATAGGTGGAGGCGATCTAAATGAGCAGCAGGAAAGATTGGGCCAGATCCGATCCGTGACGAGTCCCAACCCGGCGCCAAACTCTACTACTTCATTGGCTCCGGATTCTCCTTCAGTTTCGTCGCCGTCTTCTTCGGGTGCAATGGGAAGACTGGGAGCCGTTGATTCGGCTGGTGATCGGACGACTGGGGACGGTACTGATCACAAGTGCATGGATTTCAGTTTCTTGGAGGAGGAGTTTCAAGTGCAGTTGGCTATGGCGATTAGCGCTACGGATCCTAGTGGACGAGACGACGCTGAGTCAGCTCAGATCGATGCGGCCAAGCGGATGAGCCTCATGCGTTCACCGTCGCGTACTGCTAGTCAAGACCTCGTTGAATTTCTCACACTTCAGTATTGGAGCTATAATGTCGTAGGCTATGATGAAAAAGTGATGGATGGGTTTTATGACGTATATGGCATCAGCCCGCATTTAACCCTGCAAGGGAAGATGCCAATGTTGGTTGATCTTCAAGCAATATCAATTTCCAATGATGTTGATTACGAAGTAATCTTGGTGAACCGCCAAATTGATCCAGAACTTAGACAACTGGAAAAACAAGCTTGTAATGCTTCCATGAATAGTGAAGTTTCTGAAAATGGACTTCTTTCAAGTGGCCTCATACAAAGAATTTCTGATATAGTTGTTCAGAAAATGGGTGGTCTTGTCGGCGGCACTGATGACATGTTGAGAAGGTGGACCTTGAGGAGTTATCAGTTACGGTGTTCTCTGAATACTATCGTCTTACCTATTGGTCGTCTTGATGTTGGACTTTCTCGTCATAGAGCCTTGCTATTTAAGGTACTAGCTGACAGGATTAATCTTCCATGTATATTGGTCAAAGGAAGCTATTACACTGGCACTGATGATGGAGCTGTGAATTTGATCAAAACTGATGATGGGAGTGAATATATTGTTGACCTAATGGGTGCTCCTGGGTCTCTAATTCCTTCGGAGATGCCCAGCAGTCAGCTTCCAAAGGGGGGCATTCTTGTTCGGAGCTCTACAGAAATAACTGAAACCCCAAAAATTTTCTTGCCAGAAGGTGATATAACTCAAACAATGGCTATTTCATCTAACTGTGACAGAGTAATAAAATCTGGAAGTTCAGTATCCCAGAACACTTCTTTTACACAAGAACAACAAATCGAAAGCTTTGAAAATGAGTTTGGGAAGATTAACAAGTCACGCCATTATTGTGTAAACTCATCAGGAAAAGCAACATCTGCACAAAGGAGAAAAGTTGAAGATGTTTCCAAGTATGTTATTAGTGCATCAAAGGACCCTGGATTTGCCCACAAACTACATGCTGTCTTGCTAGAGAATGGTCCATCACCTTCTCCTGCTGTGGGCTTGGAAATAGGTTTGCAAGAACAAACTCACCCTGCTAATGGAAGTGCTGGTGATGGATTTCGATGTCATCCAAATAAGTTATTATCAAGCCATGAACATTTGCTTGAATCTAGTGGAGCGGAGTCTTCAAACCGTGTTTTCGGTTACAGTAAGCAGAAACAGTTTGACTATGTATCTGCTCAACATAAAAAAGAGTTGGATACAGTTATGTGCATCCAAAATAACGTTGGAAGAATCAATAAAAGTGGATTTGGTGAAGTATCACAAGAAAATTTAATGGAGGTTAGTCTTGACCTGCATGCTCTCAGTGATGATCACAGTGAGAAGATCAACCCTGTGCTGGCTGAAGGTCCAGAATGGGAAATCTCATGGGAAGATCTCCAGATTGGTGAACGTATTGGTATTGGTTCATATGGTGAGGTCTATTGTGCAGAATGGAAGGGCAATAAAGTTGCAGTGAAGAAATTTCTGGCCCAAGATCTCTCTGGGGATGCATTGATTCAATTCAAATCCGAAGTTGAAATCATGTTAAGGATGAGACATCCTAATGTAGTTCTTTTCATGGGGGCTGTGATTCGGCCCCCACACTTCTCTATACTCACGGAGTTTCTTCTCAGGGGAAGCATGTACAGGTTACTGCATCGTTCCAATACTCAACCTAATGAAAAGAGGCGATTGAAAATGGCTCTTGATGTGGCAAAGGGAATGAATTACTTGCACACAAGCCATCCGACCATTGTACATAGGGATTTAAAGTCGCCTAATCTCCTTGTTGATAGAAACTGGGTGGTTAAGGTTTGCGATTTCGGTTTGTCACGCATAAAGCATCACACTTTTCTTTCTTCCAAGTCAACTGCTGGAACACCGGAGTGGATGGCACCGGAAGTGATAAGAAATGAACCTGCTAGTGAGAAGTGTGATATATACAGTTTTGGTGTGATTTTATGGGAGCTGGCTACTTGTCAAATCCCATGGAAAGGTTTGAACCCGATGCAGGTTGTAGGAGCAGTTGGATTCCAAAATAGACATCTTGAAATTCCAGAAAATATTGATCCAGCAGCGGCACAGATTATTAGTGATTGTTGGCACATTGAGGCACACCTGAGGCCTTCTTTTTCTCAGCTAATGTCACGTTTGCGGCATCTTGAACACCTTCTAGACAATGGAACCAAGTCTCAGAATCAAAGAACAGAGTGGTTACAATAA 2634 43.2 MSKMKHLLRKLHIGGGDLNEQQERLGQIRSVTSPNPAPNSTTSLAPDSPSVSSPSSSGAMGRLGAVDSAGDRTTGDGTDHKCMDFSFLEEEFQVQLAMAISATDPSGRDDAESAQIDAAKRMSLMRSPSRTASQDLVEFLTLQYWSYNVVGYDEKVMDGFYDVYGISPHLTLQGKMPMLVDLQAISISNDVDYEVILVNRQIDPELRQLEKQACNASMNSEVSENGLLSSGLIQRISDIVVQKMGGLVGGTDDMLRRWTLRSYQLRCSLNTIVLPIGRLDVGLSRHRALLFKVLADRINLPCILVKGSYYTGTDDGAVNLIKTDDGSEYIVDLMGAPGSLIPSEMPSSQLPKGGILVRSSTEITETPKIFLPEGDITQTMAISSNCDRVIKSGSSVSQNTSFTQEQQIESFENEFGKINKSRHYCVNSSGKATSAQRRKVEDVSKYVISASKDPGFAHKLHAVLLENGPSPSPAVGLEIGLQEQTHPANGSAGDGFRCHPNKLLSSHEHLLESSGAESSNRVFGYSKQKQFDYVSAQHKKELDTVMCIQNNVGRINKSGFGEVSQENLMEVSLDLHALSDDHSEKINPVLAEGPEWEISWEDLQIGERIGIGSYGEVYCAEWKGNKVAVKKFLAQDLSGDALIQFKSEVEIMLRMRHPNVVLFMGAVIRPPHFSILTEFLLRGSMYRLLHRSNTQPNEKRRLKMALDVAKGMNYLHTSHPTIVHRDLKSPNLLVDRNWVVKVCDFGLSRIKHHTFLSSKSTAGTPEWMAPEVIRNEPASEKCDIYSFGVILWELATCQIPWKGLNPMQVVGAVGFQNRHLEIPENIDPAAAQIISDCWHIEAHLRPSFSQLMSRLRHLEHLLDNGTKSQNQRTEWLQ 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1190376 1195243 - Conep20aG0027900.1 Cone20ag0268 460172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0268 877 Gene3D Phosphorylase Kinase; domain 1 596 680 - -
Cone20ag0268 877 FunFam PAS domain-containing protein tyrosine kinase family protein 681 873 - -
Cone20ag0268 877 MobiDBLite consensus disorder prediction 13 77 - -
Cone20ag0268 877 ProSitePatterns Protein kinases ATP-binding region signature. 609 631 IPR017441 GO:0005524(InterPro)
Cone20ag0268 877 ProSitePatterns Serine/Threonine protein kinases active-site signature. 722 734 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0268 877 MobiDBLite consensus disorder prediction 23 59 - -
Cone20ag0268 877 SUPERFAMILY Protein kinase-like (PK-like) 578 854 IPR011009 -
Cone20ag0268 877 CDD STKc_MAP3K-like 609 855 - -
Cone20ag0268 877 SMART serkin_6 603 862 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0268 877 Pfam Ethylene-responsive protein kinase Le-CTR1 138 341 - -
Cone20ag0268 877 PANTHER SERINE-THREONINE PROTEIN KINASE 75 858 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cone20ag0268 877 Gene3D Transferase(Phosphotransferase) domain 1 682 865 - -
Cone20ag0268 877 ProSiteProfiles Protein kinase domain profile. 603 862 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0268 877 PRINTS Tyrosine kinase catalytic domain signature 782 804 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0268 877 PRINTS Tyrosine kinase catalytic domain signature 716 734 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0268 877 PRINTS Tyrosine kinase catalytic domain signature 763 773 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0268 877 PRINTS Tyrosine kinase catalytic domain signature 826 848 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0268 877 PRINTS Tyrosine kinase catalytic domain signature 677 690 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0268 877 Pfam Protein tyrosine and serine/threonine kinase 603 855 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0268 877 FunFam Serine/threonine-protein kinase isoform 1 593 681 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0268 Cone-Chr20:1190376 Cone5ag0529 Cone-Chr5:2234623 2.83E-201 dispersed
Cone17ag0924 Cone-Chr17:7256256 Cone20ag0268 Cone-Chr20:1190376 0 wgd
Cone20ag0268 Cone-Chr20:1190376 Cone4ag1661 Cone-Chr4:12479695 0 wgd
Cone20ag0268 Cone-Chr20:1190376 Cone7ag1292 Cone-Chr7:9521345 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82533 PF05701 WEMBL 1.50E-204 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0268 K04424 - vvi:100264622 1008.05