Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0270 ATGATATTAATTGAGGATCTGTGGCCGCTGCTTTGTCTTGAAGGTTTCAGAGAAAAGGCTAGTGTTTTATCAGTTTCACTGTTGCAGACATTCTCTTCAACAATGGGCAACACGACCTGTGGAAGCACGGAGCTAGAGTCCTGTAGAGACGACTCTGCGGCGTTTGTTCTCAAACTCATAGCCATAGCTTCCATCCTCATTGCTGGAGTGGTTGGAATCGCCATTCCGCTGCTTGGAAAGCACCAGAAGTTTCTCAAAACCGACAGCAACGTCTTCGTGACCGCCAAAGCCTTTGCAGCCGGCGTGATACTTGCCACGGGCTTCGTCCACATGTTATCGGGAGGGTCCAAAGCCCTTTCAGACCCTTGCTTGCCTGAATACCCTTGGTCCAAGTTCCCCTTTTCGGGTTTCTTCGCCATGATGGCCTCACTCCTCACTCTCCTTGTCGACTTTGTTGGAACCCAGTATTACGAGCGGAAACAGGGGATTGTTCGGGCCAATGATGAGCCAGTCCGGGTTGGGTCAGTGGACCCGACCTTATCAGGCATTAGCGCTCAGGTCGTTGGGTCTAATGAGCAGAATGAGAAGGTGTTTGGAGAAGAAGAAGGCGGTGGAATGCATATTGTCGGAATGCATGCTCATGCGGCTCATCATAGCCATAACCATTCTCATGGGAAGGAAGCATGTGAGGGTCACGTGAAGGAACGTGCTCGATCTCAGTCTCACTCTCATAGTCATACTCACGGCCATGGACATTCGCATGACTTCGAAGAAGATGAAGATGACAATGGTGTTAGACATGTTGTAGTTTCTCAGATACTAGAACTTGGAATTGTGTCACATTCAGTGATAATCGGGTTATCACTTGGAGTTTCACAGAGCCCATGTACAATAAGACCATTAATAGCGGCCTTATCTTTTCACCAATTCTTTGAAGGATTTGCGCTTGGAGGGTGCGTCTCTCAGGCTCAATTCAACACCCTCTCATTGACTCTAATGGCGTGCTTTTTCGCGGTGACTACTCCCGTAGGGATCGGGATAGGAACTGCTATCGCATCGGTTTATAACGTGAATAGCCCGGGAGCTTTGGTAACGGAAGGGATATTGGATTCTCTGTCGGCCGGGATTTTGGTGTATATGGCTTTGGTTGATTTGATTGCTGCTGATTTTCTGAGTAAGAGGATGAGTTGCAATTTTAGGTTGCAAGTGGTTTCTTATTTTACTCTGTTTCTTGGTGCTGGATTAATGTCTTCCCTTGCTATTTGGGCTTAA 1272 47.72 MILIEDLWPLLCLEGFREKASVLSVSLLQTFSSTMGNTTCGSTELESCRDDSAAFVLKLIAIASILIAGVVGIAIPLLGKHQKFLKTDSNVFVTAKAFAAGVILATGFVHMLSGGSKALSDPCLPEYPWSKFPFSGFFAMMASLLTLLVDFVGTQYYERKQGIVRANDEPVRVGSVDPTLSGISAQVVGSNEQNEKVFGEEEGGGMHIVGMHAHAAHHSHNHSHGKEACEGHVKERARSQSHSHSHTHGHGHSHDFEEDEDDNGVRHVVVSQILELGIVSHSVIIGLSLGVSQSPCTIRPLIAALSFHQFFEGFALGGCVSQAQFNTLSLTLMACFFAVTTPVGIGIGTAIASVYNVNSPGALVTEGILDSLSAGILVYMALVDLIAADFLSKRMSCNFRLQVVSYFTLFLGAGLMSSLAIWA 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1203835 1206176 - Conep20aG0028100.1 Cone20ag0270 460174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0270 423 PANTHER ZINC/IRON TRANSPORTER 54 422 - GO:0005385(PANTHER)|GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0071577(PANTHER)
Cone20ag0270 423 Pfam ZIP Zinc transporter 57 420 IPR003689 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Cone20ag0270 423 MobiDBLite consensus disorder prediction 218 261 - -
Cone20ag0270 423 MobiDBLite consensus disorder prediction 222 242 - -
Cone20ag0270 423 NCBIfam ZIP zinc/iron transport family 40 423 IPR004698 GO:0005385(InterPro)|GO:0016020(InterPro)|GO:0071577(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0270 Cone-Chr20:1203835 Cone8ag1604 Cone-Chr8:11878688 6.21E-86 dispersed
Cone17ag0926 Cone-Chr17:7271060 Cone20ag0270 Cone-Chr20:1203835 2.68E-209 wgd
Cone20ag0270 Cone-Chr20:1203835 Cone4ag1663 Cone-Chr4:12488667 7.31E-188 wgd
Cone20ag0270 Cone-Chr20:1203835 Cone7ag1290 Cone-Chr7:9516202 7.10E-197 wgd
Cone20ag0270 Cone-Chr20:1203835 Cone7ag0057 Cone-Chr7:249044 7.10E-62 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0270 K14709 - csv:101218224 598.201