Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0273 ATGAGTAAATATGAAGACGAACCAGAAAAGGAGGATTCGAAGTCAAGAAGCTGGAGATCTTCATCGGGACAGAACTCATATCAGACGAGCTTTCATCGCGATTTAATGGCGGGAGCAGTGATGGGAGGGGTGGTGCACACGATTGTAGCCCCAATCGAAAGGGCGAAGCTTCTTTTACAGACACAAGAGGGCAACGTCGCCATTGTTGGAGTTGGGCGGGGGAGAAGGTTCAAGGGGATGTTTGATTGCATCTTTCGTACTGTTAGAGAAGAAGGCATTCTTTCGCTCTGGAGAGGCAATGGCACTAGCGTTATTCGTTACTACCCTTCCGTCGCTCTCAATTTTTCTCTCAAGGACCTCTACCGGAATATGTTAAGAAACATAAAACCACCTGAAGAAAATCACTTCCTCTCAGGCCCATCATCCAATTTCATTGCAGGAGCCGCTGCTGGCTGTACAACACTAGTCTTAATATACCCCCTCGACATTGCCCACACCCGAATCGCTGCCGATATTGGAAAACCTGATACCCGCCAGTTCCGAGGTATCCACCATTTCCTAACTACTATCTTCAGAAAAGATGGAATCCGAGGCATTTATAGAGGACTCCCCGCCTCATTACAAGGCATGGTTGTTCATAGAGGACTTTACTTTGGTGGGTTCGATACGATGAAAGAAATGATGTCTGAAAATCCAGAGTATGAGCTGGCACTGTGGAAGCGTTGGGCGGTGGCCCAGGCAGTTACAACGTCAGCTGGGCTTTTGTCATACCCTTTGGATACAGTTCGGAGGCGAATGATGATGCAGTCTGGTTCGGGACGGTGTATGTATGGAAGCACATTCGATTGTTGGAGGAAGATTTATCGGACGGAGGGGATCACATCGTTTTATCGTGGGGCTGTTTCAAATGTGTTTAGGAGTACTGGTGCGGCCGCGATTTTGGTTTTGTATGATGAGGTAAAGAAGTTCATGTGGGGTGGCTGGTAG 987 47.92 MSKYEDEPEKEDSKSRSWRSSSGQNSYQTSFHRDLMAGAVMGGVVHTIVAPIERAKLLLQTQEGNVAIVGVGRGRRFKGMFDCIFRTVREEGILSLWRGNGTSVIRYYPSVALNFSLKDLYRNMLRNIKPPEENHFLSGPSSNFIAGAAAGCTTLVLIYPLDIAHTRIAADIGKPDTRQFRGIHHFLTTIFRKDGIRGIYRGLPASLQGMVVHRGLYFGGFDTMKEMMSENPEYELALWKRWAVAQAVTTSAGLLSYPLDTVRRRMMMQSGSGRCMYGSTFDCWRKIYRTEGITSFYRGAVSNVFRSTGAAAILVLYDEVKKFMWGGW 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1212621 1215297 + Conep20aG0028400.1 Cone20ag0273 460177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0273 328 SUPERFAMILY Mitochondrial carrier 29 319 IPR023395 -
Cone20ag0273 328 MobiDBLite consensus disorder prediction 1 17 - -
Cone20ag0273 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 124 IPR018108 -
Cone20ag0273 328 Pfam Mitochondrial carrier protein 29 127 IPR018108 -
Cone20ag0273 328 Pfam Mitochondrial carrier protein 140 230 IPR018108 -
Cone20ag0273 328 Pfam Mitochondrial carrier protein 237 325 IPR018108 -
Cone20ag0273 328 Gene3D Mitochondrial carrier domain 33 326 IPR023395 -
Cone20ag0273 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 240 323 IPR018108 -
Cone20ag0273 328 PRINTS Mitochondrial carrier protein signature 153 171 IPR002067 GO:0055085(InterPro)
Cone20ag0273 328 PRINTS Mitochondrial carrier protein signature 200 218 IPR002067 GO:0055085(InterPro)
Cone20ag0273 328 PRINTS Mitochondrial carrier protein signature 34 47 IPR002067 GO:0055085(InterPro)
Cone20ag0273 328 PRINTS Mitochondrial carrier protein signature 47 61 IPR002067 GO:0055085(InterPro)
Cone20ag0273 328 PRINTS Mitochondrial carrier protein signature 245 267 IPR002067 GO:0055085(InterPro)
Cone20ag0273 328 PRINTS Mitochondrial carrier protein signature 99 119 IPR002067 GO:0055085(InterPro)
Cone20ag0273 328 MobiDBLite consensus disorder prediction 1 25 - -
Cone20ag0273 328 FunFam probable ADP,ATP carrier protein At5g56450 33 326 - -
Cone20ag0273 328 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 25 325 IPR002113 GO:0005471(PANTHER)|GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Cone20ag0273 328 PRINTS Adenine nucleotide translocator signature 77 98 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Cone20ag0273 328 PRINTS Adenine nucleotide translocator signature 110 122 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Cone20ag0273 328 PRINTS Adenine nucleotide translocator signature 31 43 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Cone20ag0273 328 PRINTS Adenine nucleotide translocator signature 138 151 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Cone20ag0273 328 PRINTS Adenine nucleotide translocator signature 241 257 IPR002113 GO:0005471(InterPro)|GO:0005743(InterPro)|GO:0140021(InterPro)|GO:1990544(InterPro)
Cone20ag0273 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 138 227 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0273 K05863 - - csv:101204717 492.271
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0273 Cone-Chr20:1212621 Cone8ag1517 Cone-Chr8:11444879 5.39E-66 dispersed
Cone17ag0930 Cone-Chr17:7283885 Cone20ag0273 Cone-Chr20:1212621 2.41E-230 wgd
Cone20ag0273 Cone-Chr20:1212621 Cone7ag1283 Cone-Chr7:9485488 2.44E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g90 Blo01g01462 . . . . . Bma04g00124 . . Cmo12g00580 . . . . . Cpe07g00561 . . . . . . . . . . . . . . . . . . Cone20ag0273 . . . . . . . . . . . . . . . . Cma12g00641 . Car05g00075 Cpe11g00070 . . . . . . . . . . . . . . . Lsi08g01591 . Chy03g01656 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007060 2 1 1 2 2 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 1 1 37