Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0275 ATGGGTGCGGCTTCGGGAAAATGGGTTAAAGCTCTAATAGGGTTCAATAAAAACCCAGAAAAAGAAGACCAAGAGAAGGTGTGTGGGAAGGGGAAGAAATGGAGGCTATGGAGGAGGAGCTCATCATCATCATGGGATTCCAGTAAAGGGAAGCAGAAGAAAGCATCTTCTGTACGCTCTGATTCTTTGACAGCCGCCATGGCTAAAGTGCTAAGAGCTCATCCTAAGGACTTCAAACTCGTCAAGAAAGAGTGGGCTGCTATCCGCATTCAAACTGCCTTTCGCGCCTTCTTGGCAAGACGTGCCATGAGAGCTTTGAAAGGAGTGGTGAGACTTCAAGCTCTAGTCCGGGGCCGACAGGTACGGAAACAGGCTGCCGTAACTCTAAGGTGTATGCAGGCCCTAGTCCGAGTACAGGCACGAGTCAGGGCCCGTTGTGTCCGAATGTCTATTGAAGGACAGGCCGTTCAACAAGTGCTCAAAGAACACCGTAGCAAAGCCGACCTCTTAAAGCAAGCCGAGGAAGGATGGTGTGATAGAACAGGAACATTGGATGATGTCAAGGCAAAGATACAAATAAGACAACAAGGAGCTTTTAAGAGAGAAAGAGCAATCGCATACTCACTTGCTCAAAAGCAATGGAAATCAACCCCGAATCCACCAACTACAACCCCTTTCACCTTACAAAACAGTAATGAGTTCAACAAGAACAGTTGGGGTTGGAGTTGGCTAGAACGATGGATGGCATCAAAACCATGGGAGAGCCGTTTGATTGAACATACGCAGACTGTTGATTCTTCAAGATCTTTTCCCGATTCCTCTGTAGAGGAGAAGAAACATGTAAAGAGTTCCGGACCATGTCCTTCTCCTATGGTTAAGGTTAGGAAGAACAATGTAACGACTAGGATTAGTGCAAGGCCAGTTTACAGGTCTTGTTCGAGCCCGAGTTCTGAATTGTTGCACGACGAGAGCCCTGCTACTTCTTCATCTATCTGCACTTCAACAACTCCAGTTTCTGCTAACACTGTTGTTCAAGACAAGGAGGCTTGTCCGGGATATATGGACCTGACAGAATCAATGAAGGCGAAGCGGAAAACAACACCTAGCAGTCTGAAAAGTAAGATGAGGATTCAAAGGCAATCAATGGATGAGTTTCAGTTAGTTAAGACAACAAAGACGCTCCTCCTTAATGGAGATTCCTGA 1203 46.38 MGAASGKWVKALIGFNKNPEKEDQEKVCGKGKKWRLWRRSSSSSWDSSKGKQKKASSVRSDSLTAAMAKVLRAHPKDFKLVKKEWAAIRIQTAFRAFLARRAMRALKGVVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARCVRMSIEGQAVQQVLKEHRSKADLLKQAEEGWCDRTGTLDDVKAKIQIRQQGAFKRERAIAYSLAQKQWKSTPNPPTTTPFTLQNSNEFNKNSWGWSWLERWMASKPWESRLIEHTQTVDSSRSFPDSSVEEKKHVKSSGPCPSPMVKVRKNNVTTRISARPVYRSCSSPSSELLHDESPATSSSICTSTTPVSANTVVQDKEACPGYMDLTESMKAKRKTTPSSLKSKMRIQRQSMDEFQLVKTTKTLLLNGDS 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1221713 1223603 - Conep20aG0028600.1 Cone20ag0275 460179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0275 400 ProSiteProfiles IQ motif profile. 83 111 - -
Cone20ag0275 400 MobiDBLite consensus disorder prediction 264 290 - -
Cone20ag0275 400 PANTHER IQ-DOMAIN 5-RELATED 6 381 - -
Cone20ag0275 400 Pfam IQ calmodulin-binding motif 85 104 IPR000048 GO:0005515(InterPro)
Cone20ag0275 400 ProSiteProfiles IQ motif profile. 107 134 - -
Cone20ag0275 400 MobiDBLite consensus disorder prediction 39 59 - -
Cone20ag0275 400 Gene3D - 82 134 - -
Cone20ag0275 400 MobiDBLite consensus disorder prediction 313 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0275 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1428 Cone-Chr11:10201611 Cone20ag0275 Cone-Chr20:1221713 2.19E-47 dispersed
Cone16ag0154 Cone-Chr16:896314 Cone20ag0275 Cone-Chr20:1221713 1.61E-11 dispersed
Cone18ag0162 Cone-Chr18:847631 Cone20ag0275 Cone-Chr20:1221713 5.43E-46 dispersed
Cone18ag0985 Cone-Chr18:7248465 Cone20ag0275 Cone-Chr20:1221713 3.10E-19 dispersed
Cone1ag0388 Cone-Chr1:3380608 Cone20ag0275 Cone-Chr20:1221713 7.15E-48 dispersed
Cone20ag0275 Cone-Chr20:1221713 Cone5ag1312 Cone-Chr5:7581605 8.05E-43 dispersed
Cone17ag0933 Cone-Chr17:7298473 Cone20ag0275 Cone-Chr20:1221713 1.94E-224 wgd
Cone20ag0275 Cone-Chr20:1221713 Cone4ag1669 Cone-Chr4:12509334 8.81E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g85 Blo01g01460 Blo12g01017 Bda01g00627 . Bpe02g01543 . . Bma01g02209 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0275 . . . . . . . . . . . . . . . . . Car01g01342 . . Cpe02g00266 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone5ag0328 . 91 268 IQD Protein Family AT3G09710 53.7 1.9e-48 191.0
Cone18ag0502 . 1 459 IQD Protein Family AT3G52290 53.2 6.7e-93 338.6
Cone5ag0328 . 73 293 IQD Protein Family AT2G26410 52.0 6.2e-48 189.5
Cone18ag0162 . 1 392 IQD Protein Family AT3G22190 59.9 3.4e-97 352.8
Cone11ag1428 . 1 385 IQD Protein Family AT3G22190 59.1 7.3e-92 335.1
Cone1ag0388 . 1 397 IQD Protein Family AT3G22190 53.0 1.4e-90 330.9
Cone5ag1312 . 1 397 IQD Protein Family AT3G22190 51.6 2.3e-85 313.5
Cone4ag1669 . 2 415 IQD Protein Family AT2G26180 57.2 2.9e-101 366.3
Cone20ag0275 . 4 391 IQD Protein Family AT2G26180 58.8 2.5e-100 363.2
Cone17ag0933 . 4 391 IQD Protein Family AT2G26180 57.0 7.5e-97 351.7
Cone14ag1038 . 44 231 IQD Protein Family AT2G33990 54.5 1.3e-43 174.1
Cone14ag1038 . 19 228 IQD Protein Family AT3G15050 55.2 2.3e-51 199.9
Cone15ag1024 . 36 229 IQD Protein Family AT3G15050 56.2 5.0e-51 198.7
Cone18ag0985 . 1 527 IQD Protein Family AT4G00820 50.4 4.6e-115 412.5
Cone4ag0762 . 1 383 IQD Protein Family AT3G16490 50.3 3.0e-63 240.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012873 1 0 0 0 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 0 0 26