Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0275 ATGGGTGCGGCTTCGGGAAAATGGGTTAAAGCTCTAATAGGGTTCAATAAAAACCCAGAAAAAGAAGACCAAGAGAAGGTGTGTGGGAAGGGGAAGAAATGGAGGCTATGGAGGAGGAGCTCATCATCATCATGGGATTCCAGTAAAGGGAAGCAGAAGAAAGCATCTTCTGTACGCTCTGATTCTTTGACAGCCGCCATGGCTAAAGTGCTAAGAGCTCATCCTAAGGACTTCAAACTCGTCAAGAAAGAGTGGGCTGCTATCCGCATTCAAACTGCCTTTCGCGCCTTCTTGGCAAGACGTGCCATGAGAGCTTTGAAAGGAGTGGTGAGACTTCAAGCTCTAGTCCGGGGCCGACAGGTACGGAAACAGGCTGCCGTAACTCTAAGGTGTATGCAGGCCCTAGTCCGAGTACAGGCACGAGTCAGGGCCCGTTGTGTCCGAATGTCTATTGAAGGACAGGCCGTTCAACAAGTGCTCAAAGAACACCGTAGCAAAGCCGACCTCTTAAAGCAAGCCGAGGAAGGATGGTGTGATAGAACAGGAACATTGGATGATGTCAAGGCAAAGATACAAATAAGACAACAAGGAGCTTTTAAGAGAGAAAGAGCAATCGCATACTCACTTGCTCAAAAGCAATGGAAATCAACCCCGAATCCACCAACTACAACCCCTTTCACCTTACAAAACAGTAATGAGTTCAACAAGAACAGTTGGGGTTGGAGTTGGCTAGAACGATGGATGGCATCAAAACCATGGGAGAGCCGTTTGATTGAACATACGCAGACTGTTGATTCTTCAAGATCTTTTCCCGATTCCTCTGTAGAGGAGAAGAAACATGTAAAGAGTTCCGGACCATGTCCTTCTCCTATGGTTAAGGTTAGGAAGAACAATGTAACGACTAGGATTAGTGCAAGGCCAGTTTACAGGTCTTGTTCGAGCCCGAGTTCTGAATTGTTGCACGACGAGAGCCCTGCTACTTCTTCATCTATCTGCACTTCAACAACTCCAGTTTCTGCTAACACTGTTGTTCAAGACAAGGAGGCTTGTCCGGGATATATGGACCTGACAGAATCAATGAAGGCGAAGCGGAAAACAACACCTAGCAGTCTGAAAAGTAAGATGAGGATTCAAAGGCAATCAATGGATGAGTTTCAGTTAGTTAAGACAACAAAGACGCTCCTCCTTAATGGAGATTCCTGA 1203 46.38 MGAASGKWVKALIGFNKNPEKEDQEKVCGKGKKWRLWRRSSSSSWDSSKGKQKKASSVRSDSLTAAMAKVLRAHPKDFKLVKKEWAAIRIQTAFRAFLARRAMRALKGVVRLQALVRGRQVRKQAAVTLRCMQALVRVQARVRARCVRMSIEGQAVQQVLKEHRSKADLLKQAEEGWCDRTGTLDDVKAKIQIRQQGAFKRERAIAYSLAQKQWKSTPNPPTTTPFTLQNSNEFNKNSWGWSWLERWMASKPWESRLIEHTQTVDSSRSFPDSSVEEKKHVKSSGPCPSPMVKVRKNNVTTRISARPVYRSCSSPSSELLHDESPATSSSICTSTTPVSANTVVQDKEACPGYMDLTESMKAKRKTTPSSLKSKMRIQRQSMDEFQLVKTTKTLLLNGDS 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1221713 1223603 - Conep20aG0028600.1 Cone20ag0275 460179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0275 400 ProSiteProfiles IQ motif profile. 83 111 - -
Cone20ag0275 400 MobiDBLite consensus disorder prediction 264 290 - -
Cone20ag0275 400 PANTHER IQ-DOMAIN 5-RELATED 6 381 - -
Cone20ag0275 400 Pfam IQ calmodulin-binding motif 85 104 IPR000048 GO:0005515(InterPro)
Cone20ag0275 400 ProSiteProfiles IQ motif profile. 107 134 - -
Cone20ag0275 400 MobiDBLite consensus disorder prediction 39 59 - -
Cone20ag0275 400 Gene3D - 82 134 - -
Cone20ag0275 400 MobiDBLite consensus disorder prediction 313 336 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1428 Cone-Chr11:10201611 Cone20ag0275 Cone-Chr20:1221713 2.19E-47 dispersed
Cone16ag0154 Cone-Chr16:896314 Cone20ag0275 Cone-Chr20:1221713 1.61E-11 dispersed
Cone18ag0162 Cone-Chr18:847631 Cone20ag0275 Cone-Chr20:1221713 5.43E-46 dispersed
Cone18ag0985 Cone-Chr18:7248465 Cone20ag0275 Cone-Chr20:1221713 3.10E-19 dispersed
Cone1ag0388 Cone-Chr1:3380608 Cone20ag0275 Cone-Chr20:1221713 7.15E-48 dispersed
Cone20ag0275 Cone-Chr20:1221713 Cone5ag1312 Cone-Chr5:7581605 8.05E-43 dispersed
Cone17ag0933 Cone-Chr17:7298473 Cone20ag0275 Cone-Chr20:1221713 1.94E-224 wgd
Cone20ag0275 Cone-Chr20:1221713 Cone4ag1669 Cone-Chr4:12509334 8.81E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0275 - - - 0.0