Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0276 ATGGCTGGTGTGGCACCAGAAGGATCGCAATATGACGCTCGTCAATATGATGCTAAAATGAATGAGTTACTTGAAGGAGACGGACAAGATTTTTTCACATCCTATGATGAGGTCTATGACAGTTTTGAGGCCATGGGATTGCAGGAGAACCTCTTGAGATGCATATATGCATATGGTTTTGAGAATCCTTTTGCAATTCAGGAAAGGGGTATCGTTTCCTTCTGCAAGGGACTTGATGTGATTCAACAAGCACAGTCCGGGACTGGAAAAACCGCCACATTCTGTTCCGGGGCACTAGTTCTCGCCCCCACACGAGAACTTGCCCAACAGATCGAGAAAGTTATGTGGGACCAGTGTCCGGGAAGATCAACGCATTTTCTCAAGCGGGTCCACGTTGTTGTCGGTACCCCTGGTAGGATATATGATATTTTCCAGCTTCTACCTCCGAAAATTCAAGTGGGAGTTTTGTCTGCTACAATGCCACCTGAGGCACTTGAGATAACAAGGAAGTTCATGAACAAACCCGTGCGAATTCTCGTAAAGCATGACGAGCTGACTCTTGAAGGTATCAAGCAATTCTATGTCGATGTAGAAAAAGAGGAATGGAAACTAGAGACCCTTTGTGACCTTTACGAGACCTTGGCTATTACCCAAAGTGTGATCTTTGTAAACACAAGGCGAAAAGTGGACTGGCTCACAGACAAGATGCGGGGCAGGGACCACACTGTGTCTGCAACCCATGGAGACCTGGACCAAAACACGAGGAACATAATAATGAGGGAGTTCCGGTTCGGTTCCTCCCGTGTGCTTATTACTAGTGATCTGCTGGCTAGGGGTATTGATGTCCAACAAGTCTCTCTTGTTATAAATTATGATATTCCGACTCAGCCCGAGAATTATCTCCACAGGATTGGTCGTAGTGGACGGTTTGGTAGGAAGGGTGTTGCTATAAATTTTGTTAATAAGGACGATGAACGGATGTTGTTTGATATTCAGAAGTTCTATAATGTTGTGCTCGAGGAGTTGCCGGCTAATGTCACTGATCTCCTTTGA 1053 45.49 MAGVAPEGSQYDARQYDAKMNELLEGDGQDFFTSYDEVYDSFEAMGLQENLLRCIYAYGFENPFAIQERGIVSFCKGLDVIQQAQSGTGKTATFCSGALVLAPTRELAQQIEKVMWDQCPGRSTHFLKRVHVVVGTPGRIYDIFQLLPPKIQVGVLSATMPPEALEITRKFMNKPVRILVKHDELTLEGIKQFYVDVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDLDQNTRNIIMREFRFGSSRVLITSDLLARGIDVQQVSLVINYDIPTQPENYLHRIGRSGRFGRKGVAINFVNKDDERMLFDIQKFYNVVLEELPANVTDLL 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1225314 1226922 - Conep20aG0028700.1 Cone20ag0276 460180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0276 350 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 178 IPR014001 -
Cone20ag0276 350 FunFam Eukaryotic initiation factor 4A-III 184 350 - -
Cone20ag0276 350 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724(InterPro)
Cone20ag0276 350 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 331 IPR027417 -
Cone20ag0276 350 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 189 350 IPR001650 -
Cone20ag0276 350 SMART helicmild6 230 311 IPR001650 -
Cone20ag0276 350 SMART ultradead3 59 193 IPR014001 -
Cone20ag0276 350 Gene3D - 143 185 IPR027417 -
Cone20ag0276 350 Gene3D - 36 142 IPR027417 -
Cone20ag0276 350 Gene3D - 186 350 IPR027417 -
Cone20ag0276 350 Pfam Helicase conserved C-terminal domain 203 311 IPR001650 -
Cone20ag0276 350 Pfam DEAD/DEAH box helicase 65 144 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cone20ag0276 350 CDD SF2_C_DEAD 190 320 - -
Cone20ag0276 350 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 37 145 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0276 Cone-Chr20:1225314 Cone4ag0917 Cone-Chr4:7457400 3.77E-205 dispersed
Cone17ag0089 Cone-Chr17:476974 Cone20ag0276 Cone-Chr20:1225314 3.63E-197 wgd
Cone20ag0276 Cone-Chr20:1225314 Cone20ag1318 Cone-Chr20:8545884 3.17E-81 wgd
Cone20ag0276 Cone-Chr20:1225314 Cone7ag1231 Cone-Chr7:9130316 3.77E-205 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0276 K03257 - cit:102621232 579.711