Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0278 ATGAGTAGCGGTTTTCAACCCGACGATGGCGTTCCATTCAACACCACCGCCGTGGCCATCGACCATGACAAGAACAGTCAACATGCTGTCCGATGGGCCATTAGTCATCTCGTGATTAGCAATCCTCTAATTATCATAATTCACGTTAGGCATCATAACAATCGTAGATTAATGGCATCTGATCTTGTAATTTCTTGCTTTTCTGCTGATTTCTTTTCTTTATTAGAAAGCACGAGCAATGCTGCTGGCGATTCTGCCGCGCAACATCTTTTCGTTCCCTACCGTGCATACTGCGCTCGTAAATCGGTCCAATTAAAGGAGATTGTTATTGACCATGACGATGTGAGCAAAGCGCTAGCAGATTATATCCAGAGGAACTGCATAACCAATATTGTAGTCGGAGCTTCAGCAAGGAGCGCCCTAACTAGGAGATTCAAGGGAAGTGATGTGCCTTCCAACGTATTAAAGTCAGCCCCGGAATTCTGTTCTGTGTTTGTGATATCAAAAGGGAAAGTAGTTATGAGTAAAGCAGCAGCCCGACAGGCTAATAACACTGCAGCACCACCAAGACAACCATCCCCACTCGGACTTCCACCTAATGGAGATCAGCATCATCAAGATCATGCAGCCAGAGGACATCATAGAAGGGGAGGAATAAAGCATGGGGCAGAGAAATCAATGTCAGAACAGACGAGAAATGCAACGAAAACTTCACCATCTGAGATACAAAGACTTTCCACCAATTCCTCACTGGATAATCTTGAGATTCGGAGGTCAAGATCATCATTTAGCCACAACTCATTATCTGACGAGGATGTTTCTATTCACCTGCGCCAATTTGGTTCAGTAGACGTATCTCGCCAGAGTTTAGATTTCGGCATGACTCAGACTTCAATGGATTCCTCATCCACCGTAGCTGTACAAGATCTAGAGGCCGAGATGAGAAGGTTGAAGCTCGAACTAAAGCAAACCATGGATATGTATAGCACTGCTTGCAAAGAAGCAATCGCTGCCAAAAATAAGGCGAAGGAACTAAACCAGTGGAGGCTAGAGGAGACAAGGAAGTTTGAGGAAGTGAGGTCTGCTGAAGAGGCAGCTCTGGCCATTGCAGAGATGGAGAAGGCCAAGTGCAAAGCTGCCATTGAAGCAGCAGAAGCAGCAAGAAGGCTTGCTGATAAAGAAGCGCAGAGAAGAAAACATGCGGAGATGAAGGCCAGACAAGAGGCGGAGGCGAAGAACCGAGCATTGATCGCTTTGTCAAAAAATGATGTCCGGTATAGAAAATACTCCATAGATGAAATCGAGGAAGCCACGAATAAATTCTCTGAGCCCTTCAAAATAGGCGAAGGTGGGTATGGACCGGTTTATAAGGGCAGACTCGATCACACTCCAGTTGCTATCAAAGTCTTAAGACCCGATGCTGCTCAGGGGCGGAAGCAATTCCAGCAAGAGGTTGAGGTCCTTTGCTGCATGCGACATCCAAACATGGTTCTCCTCCTGGGGGCCTGTCCGGAATATGGATGCTTAGTATATGAATACATGAGCAATGGAAGCTTGGAAGATCGGATTTTCCGTAGAGGAAACACCCCACCAATACCATGGAGGGTAAGATTCAGAATAGCAGCCGAAATTGGAACTGCACTCTTATTCCTTCACCAAACCAAGCCCGAACCACTTGTCCATAGAGACCTTAAACCGGCCAACATACTCCTAGATGGCAATTACGTGAGCAAGATAAGCGACGTGGGCCTGGCCCGGTTAGTCCCGCCTTCTGTAGCGGACCAAGTGACCCAATACCACATGACCTCAGCTGCTGGGACGTTCTGTTACATCGATCCAGAGTATCAACAAACCGGAAAGTTAACTACCAAGTCAGATACATACTCATTAGGGATAATGCTGCTTCAGATTATTACTGCTAGGCCCCCTATGGCTATTTTACATCATGTTCAGAGGGCTATCGAGAAGGACAAATTTGCTGAGATGTTGGACCCTACAGTTACAGACTGGCCAATGGAAGAGACTCTAGCGTTTGCTAAATTGGCGATCAAGTGTGCACAGATGAGGAAGAAGGAAAGGCCTGAACTTGGAACGGTCGTGGTGCCTGAACTTAACGGGTTAAGAGATTTTGGAAGAAAATCTGAGCCGAATGAGATCATTTTCCCACACAACAGTGACAGTTCTCGTTCTTCAGTGTCAAGTTCACATCCAATGTTTATGAGTGCAAATCAGGTTTCATAA 2241 46.14 MSSGFQPDDGVPFNTTAVAIDHDKNSQHAVRWAISHLVISNPLIIIIHVRHHNNRRLMASDLVISCFSADFFSLLESTSNAAGDSAAQHLFVPYRAYCARKSVQLKEIVIDHDDVSKALADYIQRNCITNIVVGASARSALTRRFKGSDVPSNVLKSAPEFCSVFVISKGKVVMSKAAARQANNTAAPPRQPSPLGLPPNGDQHHQDHAARGHHRRGGIKHGAEKSMSEQTRNATKTSPSEIQRLSTNSSLDNLEIRRSRSSFSHNSLSDEDVSIHLRQFGSVDVSRQSLDFGMTQTSMDSSSTVAVQDLEAEMRRLKLELKQTMDMYSTACKEAIAAKNKAKELNQWRLEETRKFEEVRSAEEAALAIAEMEKAKCKAAIEAAEAARRLADKEAQRRKHAEMKARQEAEAKNRALIALSKNDVRYRKYSIDEIEEATNKFSEPFKIGEGGYGPVYKGRLDHTPVAIKVLRPDAAQGRKQFQQEVEVLCCMRHPNMVLLLGACPEYGCLVYEYMSNGSLEDRIFRRGNTPPIPWRVRFRIAAEIGTALLFLHQTKPEPLVHRDLKPANILLDGNYVSKISDVGLARLVPPSVADQVTQYHMTSAAGTFCYIDPEYQQTGKLTTKSDTYSLGIMLLQIITARPPMAILHHVQRAIEKDKFAEMLDPTVTDWPMEETLAFAKLAIKCAQMRKKERPELGTVVVPELNGLRDFGRKSEPNEIIFPHNSDSSRSSVSSSHPMFMSANQVS 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1246104 1249245 - Conep20aG0029100.1 Cone20ag0278 460182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0278 746 SMART serkin_6 441 704 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0278 746 MobiDBLite consensus disorder prediction 228 249 - -
Cone20ag0278 746 MobiDBLite consensus disorder prediction 715 746 - -
Cone20ag0278 746 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 13 167 - -
Cone20ag0278 746 PANTHER OS02G0152300 PROTEIN 17 723 IPR051348 -
Cone20ag0278 746 MobiDBLite consensus disorder prediction 180 249 - -
Cone20ag0278 746 CDD STK_N 15 170 - -
Cone20ag0278 746 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 414 513 - -
Cone20ag0278 746 Gene3D Transferase(Phosphotransferase) domain 1 514 718 - -
Cone20ag0278 746 Coils Coil 367 387 - -
Cone20ag0278 746 SUPERFAMILY Protein kinase-like (PK-like) 424 700 IPR011009 -
Cone20ag0278 746 Pfam Universal stress protein family 16 166 IPR006016 -
Cone20ag0278 746 Coils Coil 390 410 - -
Cone20ag0278 746 Coils Coil 307 327 - -
Cone20ag0278 746 ProSitePatterns Serine/Threonine protein kinases active-site signature. 559 571 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0278 746 Pfam Protein kinase domain 446 696 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0278 746 Gene3D Phosphorylase Kinase; domain 1 419 513 - -
Cone20ag0278 746 Gene3D HUPs 12 169 IPR014729 -
Cone20ag0278 746 ProSiteProfiles Protein kinase domain profile. 441 704 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0278 746 MobiDBLite consensus disorder prediction 720 746 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1090 Cone-Chr17:8122820 Cone20ag0278 Cone-Chr20:1246104 3.78E-55 dispersed
Cone18ag1077 Cone-Chr18:7896688 Cone20ag0278 Cone-Chr20:1246104 1.73E-82 dispersed
Cone20ag0278 Cone-Chr20:1246104 Cone20ag1403 Cone-Chr20:8955612 3.55E-220 dispersed
Cone6ag1522 Cone-Chr6:12006729 Cone20ag0278 Cone-Chr20:1246104 1.58E-33 dispersed
Cone17ag0935 Cone-Chr17:7322544 Cone20ag0278 Cone-Chr20:1246104 0 wgd
Cone17ag0083 Cone-Chr17:463705 Cone20ag0278 Cone-Chr20:1246104 7.15E-195 wgd
Cone20ag0278 Cone-Chr20:1246104 Cone20ag1321 Cone-Chr20:8556448 3.02E-191 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82534 PF03763 Remorin_C 2.20E-29 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0278 - - - 0.0