Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0280 ATGGAGCAGATAATTCCTGCATTCATAGTTCCAGTTAGGCTAGGCAGCAATCCAGTTTGCGATATCACAAGTCTAAAACTCATGGCTTGTAATAGTAGTAGTACTGATGACTTGGAGAATGAGATTAGTGTTTCGGAAAAGGGTGGAGGGGATGAATTGGCCATAATATCACATGAAAGTGAAGAAGATGATTCGCTTTCATTAGAAGGCGATCCGAATCTTGATGGGTCATGTTCCCTTTCTGTGGCAAGTGAAATTAGTAGTCTTTGTGGAGAAGATTTCTTGAGCTTTGAAGCATCTTCTGAAATAGAAAGTGATAATAAGACCATTTGCAGGGTTGAATCAATTGTTGTCGCTAAGGCTAGTAGTAATTCAAGTGATCTACTTGCTCAAGATGGGTCTGCCTCGAAGTCATTGAAAATCGATCATCTTGTTCAATTACCGCTACAAAAGACGGTAAGTGGGACCATTGGTAGGAGCATTTTTGAGGTGGATTATGTCCCTCTTTGGGGATTCACTTCGATTTGTGGCAAAAGACCTGAAATGGAAGATTCTCTAGCAACTGTTCCTCAATTCTTAGAAATCCCAATTCAAATGCTAGTAGGTGATAGGGTTCTTGATGGGACAAGCAAGTCTATAACCCATCAAACCATTCATTTCTTCGGAGTTTACGATGGCCATGGTGGTTCTCAGGTTGCGAATTACTGTCGTGATAGGATGCATAGGGCTCTAGCCGAGGAGATAGAATCTGGTAATGTTGTTAGTGAATATAGTTGCCAAGAGCAATGGAGAAAGGCATTCACTAATTGCTTTCGTAAGGTAGATTCTGAGGTGGGAGGCAAATCTAGCGCTGATCCTATTGCTCCTGAAACTGTGGGCTCAACTGCTGTGGTTGCTCTTACTTGTGCTTCTCATATTATCGTAGCAAACTGTGGTGATTCTCGAGCCGTTTTATACAGAGGGAAAGAATCTATCGCCTTGTCAGTAGATCACAAACCGGATAGAGAGGATGAATGTGCAAGAATCGAAGCAGCAGGAGGGAAGGTCATAAAATGGAACGGATCTAGAGTTTTTGGTGTTCTTGCTATGTCTAGATCTATAGGTGATAGGTACTTAAAACCATGGATTATTCCGGACCCAGAAGTGACTTTTCTTCCTCGGACCAAAGATGATGAATGTCTTGTCTTAGCTACTGATGGGTTATGGGATGTAATGTCAAATGAAGAGGTTTGTGATATTGCCCGGAAAAGAATCCTTATCTGGCATAAAAAGAACGGGGTTATTACAACACCCTCTTCTGAGAGGGGTGTGGTGCCCGATCCGGCTGCTCAAGCGGCGGCAGAATATCTAGCGAACCGAGCGCTTCAAAAGGGTAGTAAGGACAATATCACTGTTATTGTTGTGGACTTGAAAGCTCAAAGAAAGTTCAAGTCAAAAACATGA 1443 42.34 MEQIIPAFIVPVRLGSNPVCDITSLKLMACNSSSTDDLENEISVSEKGGGDELAIISHESEEDDSLSLEGDPNLDGSCSLSVASEISSLCGEDFLSFEASSEIESDNKTICRVESIVVAKASSNSSDLLAQDGSASKSLKIDHLVQLPLQKTVSGTIGRSIFEVDYVPLWGFTSICGKRPEMEDSLATVPQFLEIPIQMLVGDRVLDGTSKSITHQTIHFFGVYDGHGGSQVANYCRDRMHRALAEEIESGNVVSEYSCQEQWRKAFTNCFRKVDSEVGGKSSADPIAPETVGSTAVVALTCASHIIVANCGDSRAVLYRGKESIALSVDHKPDREDECARIEAAGGKVIKWNGSRVFGVLAMSRSIGDRYLKPWIIPDPEVTFLPRTKDDECLVLATDGLWDVMSNEEVCDIARKRILIWHKKNGVITTPSSERGVVPDPAAQAAAEYLANRALQKGSKDNITVIVVDLKAQRKFKSKT 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1254286 1257202 + Conep20aG0029300.1 Cone20ag0280 460184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0280 480 CDD PP2Cc 171 470 IPR001932 -
Cone20ag0280 480 ProSitePatterns PPM-type phosphatase domain signature. 220 228 IPR000222 GO:0043169(InterPro)
Cone20ag0280 480 ProSiteProfiles PPM-type phosphatase domain profile. 169 470 IPR001932 -
Cone20ag0280 480 Pfam Protein phosphatase 2C 213 463 IPR001932 -
Cone20ag0280 480 SUPERFAMILY PP2C-like 164 471 IPR036457 -
Cone20ag0280 480 PANTHER PROTEIN PHOSPHATASE 120 469 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0009788(PANTHER)|GO:0035970(PANTHER)
Cone20ag0280 480 SMART PP2C_4 159 468 IPR001932 -
Cone20ag0280 480 Gene3D - 156 480 IPR036457 -
Cone20ag0280 480 FunFam Protein phosphatase 2C 16 157 480 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0280 Cone-Chr20:1254286 Cone5ag0241 Cone-Chr5:1020716 2.13E-77 dispersed
Cone8ag1481 Cone-Chr8:11312853 Cone20ag0280 Cone-Chr20:1254286 1.25E-17 dispersed
Cone18ag0629 Cone-Chr18:3239120 Cone20ag0280 Cone-Chr20:1254286 2.09E-19 transposed
Cone17ag0937 Cone-Chr17:7332025 Cone20ag0280 Cone-Chr20:1254286 0 wgd
Cone20ag0280 Cone-Chr20:1254286 Cone7ag1594 Cone-Chr7:10900747 3.68E-26 wgd
Cone20ag0280 Cone-Chr20:1254286 Cone7ag1233 Cone-Chr7:9143732 1.13E-163 wgd
Cone20ag0280 Cone-Chr20:1254286 Cone7ag0047 Cone-Chr7:202661 2.20E-56 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0280 K14497 - vvi:100242262 608.601