Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0295 ATGAGTGTTAAGAGGAATATTACATGGAAATCTATGATTTCAATTACTTGTTATAACTTTCTCAGTGCTGATCATCATCATGATAATTTCATCTCACCGGAATATTCCGAGATACGTGTTCTGAAGCAAAGTTCTGATCAACTGAGGCTGTCTCTCTCGGATGCAAGCTCCGGCCAACTATCAGCCGATGATCTCTCAAACTCTCTAGTGGGATCAAAACTGTATAAATTCTCAATGGCTGAGCTAACAGTTATGACCCATGATTTCTCATATAGTAATCTGCTCGGAGAAGGTGGGTTTGGACCGGTTTACAAAGGCTTTGCAGATGAGAAGACAAAACCCGGTTTAAAGGCTCAACCTATTGCAGTCAAATTGCTCAACTTGGATGGCTCTCAAGGCCATAGGGAGTGGCTGGCAGAAATCATATTTCTAGGACAGCTGAGGCATGCCAACCTGGTCAAGCTGATCGGGTACTGCTGGGAGGAGGATTATAGGCTTCTGGTTTATGAATATATGCCAAGGGGAAGCTTAGATAAACACCTCTTCAATATATATTCTGCTTCATTGCCATGGTCAACGAGGATGAAGATTGCAGTTGGAGCTGCCAAGGGACTCGCTTTTCTCCATGAGGCAGATACACCTGTCATATACAGAGATTTCAAGGCTTCAAATATACTATTAGACTCGGATTATACACCTAAGCTGTCAGATTTTGGCCTAGCAAAAGAGGGATGGTCAGAAGGGGAAGAAGACAAAAGGATAATGGGCACAAAAGGATATACCGCACCTGAGTACATCATGAACGGGCAGTTGACGACTAAGAGTGATGTGTATAGTTTTGGGATATTCATGTTGGAGCTTCTGACAGGGAAAAAGTCAATGAGTCGAACTAAGACCTGCCAGAGTGGAAGGGAGGAAATGGGCCTTGTGGAATGGGCTGGTCCATTTTTGAAGGATCCAAGAAAGCTATACCGGGTCATGGACCCTAGACTTGAAGAGCAATACTCAATCAAGGGTGCGGAAAAGGCAGCCAGATTGGCCCATAAATGTCTCGGCCATCGTCCAAAGACTAGACCTTCAATGGGTGAAGTGGTCGGTGTGTTAGAGTCTCTTTTGGGATTTGAGGACTTGCTTGTTAGAGAACCTTTTGTTTATATCGTGCCTAATGAAGTCTATTTCGACGAGGAAAAAGATCATGATGAAGGAGGGCGAAATGGACCCCTCCGCCGTGGTTGGCGGTGCTGCTGTCCTGTCCGGTAA 1260 44.76 MSVKRNITWKSMISITCYNFLSADHHHDNFISPEYSEIRVLKQSSDQLRLSLSDASSGQLSADDLSNSLVGSKLYKFSMAELTVMTHDFSYSNLLGEGGFGPVYKGFADEKTKPGLKAQPIAVKLLNLDGSQGHREWLAEIIFLGQLRHANLVKLIGYCWEEDYRLLVYEYMPRGSLDKHLFNIYSASLPWSTRMKIAVGAAKGLAFLHEADTPVIYRDFKASNILLDSDYTPKLSDFGLAKEGWSEGEEDKRIMGTKGYTAPEYIMNGQLTTKSDVYSFGIFMLELLTGKKSMSRTKTCQSGREEMGLVEWAGPFLKDPRKLYRVMDPRLEEQYSIKGAEKAARLAHKCLGHRPKTRPSMGEVVGVLESLLGFEDLLVREPFVYIVPNEVYFDEEKDHDEGGRNGPLRRGWRCCCPVR 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1322293 1324495 + Conep20aG0030800.1 Cone20ag0295 460199

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0295 419 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 172 377 - -
Cone20ag0295 419 ProSiteProfiles Protein kinase domain profile. 89 372 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0295 419 Gene3D Phosphorylase Kinase; domain 1 53 171 - -
Cone20ag0295 419 Pfam Protein kinase domain 91 365 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0295 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0295 419 FunFam Serine/threonine-protein kinase BIK1 56 171 - -
Cone20ag0295 419 SUPERFAMILY Protein kinase-like (PK-like) 74 389 IPR011009 -
Cone20ag0295 419 PANTHER OS01G0588500 PROTEIN-RELATED 65 371 IPR050823 -
Cone20ag0295 419 Gene3D Transferase(Phosphotransferase) domain 1 172 376 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0295 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0295 Cone-Chr20:1322293 Cone4ag0015 Cone-Chr4:85882 9.48E-156 dispersed
Cone17ag0951 Cone-Chr17:7435497 Cone20ag0295 Cone-Chr20:1322293 1.91E-241 wgd
Cone17ag0068 Cone-Chr17:366515 Cone20ag0295 Cone-Chr20:1322293 1.81E-08 wgd
Cone20ag0295 Cone-Chr20:1322293 Cone20ag1335 Cone-Chr20:8622485 1.40E-138 wgd
Cone20ag0295 Cone-Chr20:1322293 Cone4ag1704 Cone-Chr4:12665524 5.51E-141 wgd
Cone20ag0295 Cone-Chr20:1322293 Cone7ag1620 Cone-Chr7:11009440 9.53E-142 wgd
Cone20ag0295 Cone-Chr20:1322293 Cone7ag0020 Cone-Chr7:94079 3.33E-156 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g173 . . . . . . . . . . Cma01g01697 . Car09g00319 . . Cpe07g00604 . . . . . . . . Cla05g01635 . . . . . . Cone4ag1704 Cone7ag1620 Cone17ag0951 Cone20ag0295 . . . . . . . . . . . . . . Cmo09g00372 . . Car01g01311 . . . Bhi09g03070 . . . . Mch11g0459 . . . . . . . . . . . Cme07g00169
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82535 PF00400 WD40 0.00022 CL0186 Cone PK