Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0299 ATGGGCGGAGGAGGTAAAGTCGAATTGGTTAGCAGCAAGGGTTGTTCTAAGCTTTTTTCTGGCTTCTCGTCTTCTTCTTCATTGTCTTCATTTAGAGGTCTGCAACCATTCGAGCCATTGTCTCCTGTTACATCATCCTCTCTCGGTTCTGAATCCTTGAAATCTCGACCGGCTGCTCCTTTTACTGGTCTTGTTATCTGCGTCACTGGTTTATCCAAAGAAGCAAGGAAACAAGTCATGGAAGCAACAGAGAGATTAGGTTGTCAGTACAGCCCTAATTTGCATCCGCAATGCACCCATCTGGTGGTCCAGAGTTTGGGTGGACGTAAATTTGAGCATGCTTTGAAACATGGATCTAGAAATGGACTTTTTGTTGTTACGATCGGATGGTTTGTGGATAGCGTAAGGAGAAACGTGAGGTTGAGTGAGTCACTCTATGCTATTAAGAATCATGGAGAAAACAGTATGCAGTTGGATGCATTGAATCATCTTAATGGTGTGGTGGGTATTGAAAATTCTTGTTTTCCTCCTATTGGCTCTCATGCTCAGAGTGAATTCGATGCACCTGGAAGAAGGTCCAATAAAAGTCCAGAGTCGATTTTTTTGGGTCAATCCATGTATATTGATACAAGCATTTCGTCTGAGCTGCGGAATAAAGTTGTTAAGGTTGCTACGAGAGAAGGTGCCTCATTCCTAGATCAATGGTTTGTCGGGTGCAGTACTAGTCACGTGGTTTGTGAAGGAAGTTCCATTCAAAGATATCTTGGCCACTCGAGTAATCTAGTCACACCTCTATGGGTTCTGAAAACAGCGAAGGAAAAATGCTTGCAAAGACTTGTTCATATGTCTACTGACTTGGCAAGGCAGATCAACACGATGCTTGAAGATTTTCAACACGGCATTCTCGGACAGGCGTTAAATGAGAAAAGTTCAGGAGAAGATATTAAGAATTATAGAAGCAAAGCAAGCCAGAGAGAACGAGAACAGATTGCCACCTCTGCTAAAATCAGAGTCAGAAATCGCCGTGGTCGTAAAATGCGGCAGACATGTCAAACCCCACTACGGCCTATAACACCAAGTAGTCTTCTGGATTCGATCAGCTGGTCAATATCTGAGCCAACTTCATCTGCTTCTATTTACACTGACTCTTTTAGTGGTGAAGATGTGAGCGAGCACCATGCTTCTGTATATTTCGATGCAAATGCAGATGGCAAGGAATCTGAAGCTTCATTATCAAACTTAACCCGGCGACTCACTGAAAGTGAGAAATCCGAAATTGTATTTAAAAACCATTTTTTGACCATACTGTTTCCATTAGACCGATTTGGCGAGATGGGGCCTTCTTCAAGAACATTCTTTAGTGAGAATGGCTTCACTTGTTTGCAGGTCTTGGATCATATATATTCATTTTATCAGGAGAATATGTCATCTGAAGAAGTAGAGGCTGCAATTCATACCGATTCAATGCATGCTGATAGGCTCCGATCAGCATATTCGAGTAGAGAAACAGTAGAACACGGTTATGTCAGTTTCAAAAGAATCGAGTTTTTAGGGAGCTGTAAAAGTTTTGAGATACTAAAGCGGGTCTGTGGTGACAACAACAGTAATGTATATGAGCTTCTGATCAGAGCCTGA 1635 42.2 MGGGGKVELVSSKGCSKLFSGFSSSSSLSSFRGLQPFEPLSPVTSSSLGSESLKSRPAAPFTGLVICVTGLSKEARKQVMEATERLGCQYSPNLHPQCTHLVVQSLGGRKFEHALKHGSRNGLFVVTIGWFVDSVRRNVRLSESLYAIKNHGENSMQLDALNHLNGVVGIENSCFPPIGSHAQSEFDAPGRRSNKSPESIFLGQSMYIDTSISSELRNKVVKVATREGASFLDQWFVGCSTSHVVCEGSSIQRYLGHSSNLVTPLWVLKTAKEKCLQRLVHMSTDLARQINTMLEDFQHGILGQALNEKSSGEDIKNYRSKASQREREQIATSAKIRVRNRRGRKMRQTCQTPLRPITPSSLLDSISWSISEPTSSASIYTDSFSGEDVSEHHASVYFDANADGKESEASLSNLTRRLTESEKSEIVFKNHFLTILFPLDRFGEMGPSSRTFFSENGFTCLQVLDHIYSFYQENMSSEEVEAAIHTDSMHADRLRSAYSSRETVEHGYVSFKRIEFLGSCKSFEILKRVCGDNNSNVYELLIRA 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1334767 1338180 - Conep20aG0031200.1 Cone20ag0299 460203

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0299 544 ProSiteProfiles BRCT domain profile. 196 274 IPR001357 -
Cone20ag0299 544 SMART BRCT_7 58 138 IPR001357 -
Cone20ag0299 544 SMART BRCT_7 198 274 IPR001357 -
Cone20ag0299 544 SUPERFAMILY BRCT domain 58 149 IPR036420 -
Cone20ag0299 544 CDD BRCT_TopBP1_rpt2_like 60 138 - -
Cone20ag0299 544 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 1 544 - -
Cone20ag0299 544 Pfam twin BRCT domain 64 130 IPR001357 -
Cone20ag0299 544 SUPERFAMILY BRCT domain 199 277 IPR036420 -
Cone20ag0299 544 Gene3D BRCT domain 59 150 IPR036420 -
Cone20ag0299 544 ProSiteProfiles BRCT domain profile. 56 148 IPR001357 -
Cone20ag0299 544 Pfam Family of unknown function (DUF6699) 455 528 IPR046522 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0299 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0955 Cone-Chr17:7455483 Cone20ag0299 Cone-Chr20:1334767 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g180 . . . . Bpe02g01568 . . . . . . . . . Sed08g1811 . . Bhi04g01532 Tan02g1572 Cmetu03g1762 . Hepe08g1448 . Lcy13g2233 . . . . . . . . . Cone17ag0955 Cone20ag0299 . . . . . Blo18g00254 . Bda13g01582 Bpe14g00286 . . Bma02g00333 . . . . . . Car05g00889 . . . . . . . . . Cla08g00978 Cam08g1427 Cec08g1005 Cco08g1128 Clacu08g1132 . Cre08g0915 Lsi08g00825 . Chy03g00647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007854 1 3 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 36