Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0303 ATGACGGCTGCACAGAACACCACTGGCTTAGTGTCTGTGAATGTTGGTGTCATTCTCGACTTAGACACCAGTTTTAGTAAGATGAGCTTGACCTGTATCAACATAGCCTTGTCCGATTTCTATGCCTCCCATGCTTCCTACAAGACCAGAGTTGTCCTTTCTACTAGGAACTCCAAGCAAGATGTTATTGAAGCAGCATCTGCAGCTCTAGACCTTATAAACAATGGCAAAGTGCAAGCCATCTTAGGTCCAGTCACTTCGATGCAAGCAAGCTTTGTTATCCAATTGGGAAAGAAAGCTCGAGTCCCCATCATCTCATTCACTGCAACAGACCCTTCTCTTACCTCTCTAGGAAGTTCATATTTCTTCCGAATTGCACAAAACGACTCATACCAAGTCCTAGCTATCCATTCCATTGTTAAAGCATTCGGGTGGAGACAAGTCGTTCCCATCTACGTAGAGAACAATTTTGGAGATGGCCCCATACCTTCCTTGACCGATGCCTTGCAAGAAGAAGATGCTCGAATCCCTTACCGAAGCGTGATCCCTCCATCAGCTTCTGATGACTTCATTCTTGCAGAACTATATAAGCTTATGACAATGCAAACTAGAGTCTTTGTTGTGCACATGTATCCAGATCTTGCATCTAGGATTTTTATGAAAGCCAAAGAGATTGGAATGATGAGTAAAGGGTATGTTTGGATTGTGACTGATTCAATAGCTAATGAATTGAATTCCTTGGATGCTTCAGTTTTTAAATCGATGCAGGGGATATTAGGTGTGAAGACTCATGTTGAAAGGTCAGAAAAGCTTGATGATTTTACAGTTAGATGGAAAAGGAAGTTTCAACAAGAAAATCCAAATCACAACCAGGACTTGGATGTTTTTGGAATATGGGGTTATGATGCTGTGTGGGCCCTAGCCATGGCAGTTGAGAACGTTGGAGACTTAAGTGATCTGAATGGCCGTAAAATAGGAGATGAATTGTCAACAACTCAGTTTATTGGCCTGAGCGGAGAGTTTAAGCTCGTGAATCGGCAACTGCAATCCCCGATTTTCGAGATACTGAACATTCACGGAAATGGAGGAGTGGGTATTGGGTTTTGGACGCCAGAAACCGGACTGACGAAAGTGTTGAATCCAACTGAGATGTCATCTTTAACAAAGGGCAATCTGAGTACAATTATATGGCCCGGAGATTCTACTTCAGTTCCCAAGGGGTGGGAGATTCCGACAAATGGAAAGAAGTTGAGAATAGGAGTTCCTGTCAAGCATGGTTTTACTGAATTCATCAAAGTGACAAATAATTCAGACACTGGTTCAGTAGAAGCCACGGGCTTCGTAATAGATATCTTTAAAGAAGTTTTAGCAGCTCTACCTTACGCTCTGCCTCATGAATTCATTCCCTTCGATATAAAACCTGGAGATAGTACTGGAACTTACAACGATTTGCTCTATCACCTTTTTCTTGGGGAATTTGATGCCGTGGTGGGAGACACGACGATCATAGCGAATAGATCTTTGTATGTTGACTTTACATTACCATACACAGAATCAGGAGTCTCCATGGTGGTGCGAATGAAGGATAACTGGAGAAAAAACGCATGGGCATTCTTGAAGCCTTTGACTTGGGATCTCTGGTTAGCAAGTGGTTTTATATTTATCTTTATCGGTTTTATAGTTTTCTTTCTCGAACGCAAGGAAAATGACCAATTCCAAGGGAAACGACTTGATCAGATCAGCACGAGCTTGTGGTTTGGCTTCTCCATTATGGTTTTTGCACAAAAGGAAGAGGTGAAAACCAAGTTGGCTCGAGCTGTGCTAGTTGTATGGTTCTTTGTGGTCTTAGTCCTTACTCAAAGTTACACTGCAAGCTTGTCTTCACTGTTAACTATTGAACAGCTTCAACCAACAGTAACTGATATCGACCAGCTTGTACAGAGTAAAGAACATGTTGGTTACAAAAGGGGTTCTTTTGTGTATCATATCTTGAAGTCCTTGAAATTTGATGATTCTAGGCTTGTTGTTTATAGCACTCCAGAAGAAATGGATGATCTCTTCGAAAAAGGAACTGCTAAAGGGGGTTTTGCCGCCGCTTTTGATGAAATCCCGTATCTGAAGCTTTCTCTTTCCAAGTATTGTCCCAAATATAGCATGCAACCCCCTCAGTTTAAGACAGACGGCTTTGGATTTGCGTTTCCAATAGGGTCCCCTCTCGTATCTGACATGTCAAGGGCAATATTAAATGTGACACAAGGAGAAAAAATGACCCAGATAGAAAACAAGTGGTTTGAAAAACATGATGGGTGCCCTTCTTCAAGGCTTCAAGTGAATTCTACCAGTCTGAGTCTAGATAGCTTCTGGGTCCTCTTCGTCTCTGCCGTGATATTTTCGCTCTTAGCAGTCTGCATTTTCATAATCATAGGTGTCCTTCGCAATCGTGATGATCTGAAGGCAAAAAGTGAGGTTTTTGCTAGTGCTCGTGACGTTTTAGAAACTGATGATGATCATGAGGGCCCACCAAATTCCAGTTCGCCAAGTCCGTCAAATGATGCTACTCGAAAAGCTAGTACCGAAATAGCACCAGCTATCGAACTCACAGCTTGA 2607 42.27 MTAAQNTTGLVSVNVGVILDLDTSFSKMSLTCINIALSDFYASHASYKTRVVLSTRNSKQDVIEAASAALDLINNGKVQAILGPVTSMQASFVIQLGKKARVPIISFTATDPSLTSLGSSYFFRIAQNDSYQVLAIHSIVKAFGWRQVVPIYVENNFGDGPIPSLTDALQEEDARIPYRSVIPPSASDDFILAELYKLMTMQTRVFVVHMYPDLASRIFMKAKEIGMMSKGYVWIVTDSIANELNSLDASVFKSMQGILGVKTHVERSEKLDDFTVRWKRKFQQENPNHNQDLDVFGIWGYDAVWALAMAVENVGDLSDLNGRKIGDELSTTQFIGLSGEFKLVNRQLQSPIFEILNIHGNGGVGIGFWTPETGLTKVLNPTEMSSLTKGNLSTIIWPGDSTSVPKGWEIPTNGKKLRIGVPVKHGFTEFIKVTNNSDTGSVEATGFVIDIFKEVLAALPYALPHEFIPFDIKPGDSTGTYNDLLYHLFLGEFDAVVGDTTIIANRSLYVDFTLPYTESGVSMVVRMKDNWRKNAWAFLKPLTWDLWLASGFIFIFIGFIVFFLERKENDQFQGKRLDQISTSLWFGFSIMVFAQKEEVKTKLARAVLVVWFFVVLVLTQSYTASLSSLLTIEQLQPTVTDIDQLVQSKEHVGYKRGSFVYHILKSLKFDDSRLVVYSTPEEMDDLFEKGTAKGGFAAAFDEIPYLKLSLSKYCPKYSMQPPQFKTDGFGFAFPIGSPLVSDMSRAILNVTQGEKMTQIENKWFEKHDGCPSSRLQVNSTSLSLDSFWVLFVSAVIFSLLAVCIFIIIGVLRNRDDLKAKSEVFASARDVLETDDDHEGPPNSSSPSPSNDATRKASTEIAPAIELTA 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1349219 1352142 - Conep20aG0031600.1 Cone20ag0303 460207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0303 868 FunFam Glutamate receptor 535 665 - -
Cone20ag0303 868 Gene3D - 130 294 - -
Cone20ag0303 868 MobiDBLite consensus disorder prediction 830 868 - -
Cone20ag0303 868 MobiDBLite consensus disorder prediction 840 856 - -
Cone20ag0303 868 SMART GluR_14 418 766 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone20ag0303 868 Pfam Ligand-gated ion channel 766 795 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone20ag0303 868 Gene3D - 295 415 - -
Cone20ag0303 868 Pfam Receptor family ligand binding region 31 361 IPR001828 -
Cone20ag0303 868 FunFam Glutamate receptor 2.7 672 772 - -
Cone20ag0303 868 FunFam Glutamate receptor 416 535 - -
Cone20ag0303 868 Gene3D - 715 772 - -
Cone20ag0303 868 CDD GluR_Plant 415 764 - -
Cone20ag0303 868 Gene3D - 537 667 - -
Cone20ag0303 868 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 828 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cone20ag0303 868 PIRSF IGluLR_plant 1 863 IPR017103 -
Cone20ag0303 868 SUPERFAMILY Periplasmic binding protein-like I 13 409 IPR028082 -
Cone20ag0303 868 SUPERFAMILY Periplasmic binding protein-like II 393 765 - -
Cone20ag0303 868 Gene3D - 416 536 - -
Cone20ag0303 868 FunFam Glutamate receptor 134 292 - -
Cone20ag0303 868 Pfam Bacterial extracellular solute-binding proteins, family 3 443 542 IPR001638 -
Cone20ag0303 868 CDD PBP1_GABAb_receptor_plant 14 379 IPR044440 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0961 Cone-Chr17:7481978 Cone20ag0303 Cone-Chr20:1349219 0 dispersed
Cone20ag0303 Cone-Chr20:1349219 Cone4ag1720 Cone-Chr4:12748458 0 dispersed
Cone17ag0960 Cone-Chr17:7475325 Cone20ag0303 Cone-Chr20:1349219 0 wgd
Cone20ag0303 Cone-Chr20:1349219 Cone4ag1717 Cone-Chr4:12718045 0 wgd
Cone20ag0303 Cone-Chr20:1349219 Cone7ag1635 Cone-Chr7:11055723 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0303 K05387 - mdm:103423140 930.628