Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0308 ATGAAGTCACTGAACGGCGTAATTGGGCCTCCATTATCTGTTATCTCCCAATTATTAACAACCCATTGCTGGAAACTCAAACTAGGCTCCATTTCAGACATCTACACTGCAAACAGGCTCTTAAATGGATATGCGAAATGTGGAGAAATCAATTACGCCCACAGACGGTTCGACGAAATGTCCCACAGAGACACCGTCTCTTGGAACACCATAATTTCTGGGTATGTAAACTCTGGAAACTTAGACGCTGCTTGGGAAGTTCTAAAATGCATGAAAAGAGATGGGTTTGAGTTTGATGAGTACACATTTGGAAGCATATTGAAAGGGGTTGCTAATGCTAACCGGCTTGATTTCGGGCAGCAAGTACATTCAATGGTTGTCAAGATGGGCCAGGCTGGAAATGTTTATTCGGGCAGTGCCCTTTTGGATATGTATGCAAAATGCAACAGAGTTGAGGATGCATTTGTCGCTTTTCAAACCATACCGGAACGTAATACTGTCTCTTGGAATGCTCTTATTACGGGATTTGCTCAAGTGGGTGATCGTGAAAATGCGTTTTGGCTACTAGAATGTATGGAGAATGAGAATGTTGAGATTGATGACGGCACATTTGCTTCTCTTTTGCCATTGCTTGATGATCCCGAGTTCTATAAATTGACAATGCAAGTTCATGGAAAGGTTATAAAACATGGGTTGGAATTTGATAAAACTGTTTGCAATGCAACGATCGCTTCATATTCAGAATGTGGGTCCCTTGATGATGCAGAAAGAGTGTTTGATGGGTCAAGTAGGACCAGAGATTTGGTGACGTGGAATTCCATGTTGGCTGCTTACTTGTTGCACAAGAAACAAGATCTTGCTCTTAAACTCTTGATTGGTATGGAAGAAAATGGTTTTCAACCGGATATTTATTCTTACACGAGTGTTATTAGCGTGTGTTTTGAAGAAAATCATAATGATCATGGAAAATCCTTACATGGGGTGGTTATAAAGAGGGGACTTGAAAAATCTGTGCCTATCTCAAATGCATTGATTTCTATGTATCTTAAATCAGACAAGGGATCCATGGAAGAAGCAATGAAAATATTCGGGTCCTTAGAGTTGAAGGATCGTGTTTCTTGGAACTCAATATTGACCGGGTTTTCACAATCAGGGCAGAGTGAAGATGCGGTCAAACTCTTCAGACAAATGAGATATTCCACAATAGAAACCGATCAATACGCCTTCTCTGCTATCCTCAAATCATGCTCCGATATGGCCACGGTTCAATTAGGCGAACAAATTCATGCCTTAGCACTTGAACTAGGCCTTGAGTCCAATGAATTCGTCTCTAGCTCTTTAATGTTCATGTACTCCAAGTGTGGGATCATAGAAGATGCAAGAAAATTGTTCGAAGAAACCTCTCAAGAGAAGGCAATCACATGGAATTCAATTATTTTTGGGTATGCACAGCATGGGCAGGGCAATATAGCTCTAGATCTCTTCAACTCAATGAGAGAAAAAAGGGTTAGACTTGACCATATAACCTTTGTTGCTGTTCTAACCGCTTGTAGCCATATCGGGTTAGTTGACCAAGGTTCAAAGCTTCTAAAATGCATGGAATCTGACTTCGGGATTCGACCTAGAATGGAGCATTATGCTTGTGGGGTGGATCTATATGGCCGAGCCGGGCGGTTAGAAGAGGCTAAAGCCTTGATCGAAGAAATGCCATTTAAGCCGAATGCAATGCTGTGGACGACTCTATTGGGTGCTTGTAGAAGTTGCGGAAATATCGAGCTGGCTAGACAAGTAGCCGCTCATTTGCTCGAGCTACAGCCGAAAGAACATTGTACTTATGTCTTGCTTTCGGATTTGTATGGAAATCTTAACAAATGGAATGAGAAAGCTAAGATTAAGAGGTTAATGAAGGAAAGAAGAGTGAAAAAGGTTCCGGGTTGGAGTTGGATCGAAGTCAAGAATGAAGTTCATGCCTTCAATGCTGAAGATCGTTCCCACTCTTGCTATGAAGAGATTAATGTTTTATTACAAGGATTAATGGAAGAAATTAGAAGGATAAAACAAGTTGAATTTTGCTGTTACTAA 2082 40.97 MKSLNGVIGPPLSVISQLLTTHCWKLKLGSISDIYTANRLLNGYAKCGEINYAHRRFDEMSHRDTVSWNTIISGYVNSGNLDAAWEVLKCMKRDGFEFDEYTFGSILKGVANANRLDFGQQVHSMVVKMGQAGNVYSGSALLDMYAKCNRVEDAFVAFQTIPERNTVSWNALITGFAQVGDRENAFWLLECMENENVEIDDGTFASLLPLLDDPEFYKLTMQVHGKVIKHGLEFDKTVCNATIASYSECGSLDDAERVFDGSSRTRDLVTWNSMLAAYLLHKKQDLALKLLIGMEENGFQPDIYSYTSVISVCFEENHNDHGKSLHGVVIKRGLEKSVPISNALISMYLKSDKGSMEEAMKIFGSLELKDRVSWNSILTGFSQSGQSEDAVKLFRQMRYSTIETDQYAFSAILKSCSDMATVQLGEQIHALALELGLESNEFVSSSLMFMYSKCGIIEDARKLFEETSQEKAITWNSIIFGYAQHGQGNIALDLFNSMREKRVRLDHITFVAVLTACSHIGLVDQGSKLLKCMESDFGIRPRMEHYACGVDLYGRAGRLEEAKALIEEMPFKPNAMLWTTLLGACRSCGNIELARQVAAHLLELQPKEHCTYVLLSDLYGNLNKWNEKAKIKRLMKERRVKKVPGWSWIEVKNEVHAFNAEDRSHSCYEEINVLLQGLMEEIRRIKQVEFCCY 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1377345 1379426 - Conep20aG0032100.1 Cone20ag0308 460212

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0308 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Cone20ag0308 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Cone20ag0308 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 64 98 IPR002885 -
Cone20ag0308 693 PANTHER OS07G0578800 PROTEIN-RELATED 198 313 IPR045215 GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0009451(PANTHER)|GO:0009451(InterPro)|GO:0043231(PANTHER)
Cone20ag0308 693 Pfam E motif 590 650 IPR046848 -
Cone20ag0308 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 33 63 IPR002885 -
Cone20ag0308 693 Pfam PPR repeat 551 569 IPR002885 -
Cone20ag0308 693 Pfam PPR repeat 36 61 IPR002885 -
Cone20ag0308 693 Pfam PPR repeat 445 466 IPR002885 -
Cone20ag0308 693 Pfam PPR repeat family 63 112 IPR002885 -
Cone20ag0308 693 Pfam PPR repeat family 164 208 IPR002885 -
Cone20ag0308 693 Pfam PPR repeat family 472 518 IPR002885 -
Cone20ag0308 693 Pfam PPR repeat family 370 417 IPR002885 -
Cone20ag0308 693 Pfam PPR repeat family 267 313 IPR002885 -
Cone20ag0308 693 FunFam pentatricopeptide repeat-containing protein At2g33680 444 670 - -
Cone20ag0308 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Cone20ag0308 693 Coils Coil 668 688 - -
Cone20ag0308 693 Gene3D Tetratricopeptide repeat domain 118 212 IPR011990 GO:0005515(InterPro)
Cone20ag0308 693 SUPERFAMILY TPR-like 436 630 IPR011990 GO:0005515(InterPro)
Cone20ag0308 693 FunFam Pentatricopeptide repeat-containing protein At3g26782, mitochondrial 322 429 - -
Cone20ag0308 693 NCBIfam pentatricopeptide repeat 473 506 IPR002885 -
Cone20ag0308 693 NCBIfam pentatricopeptide repeat 372 398 IPR002885 -
Cone20ag0308 693 NCBIfam pentatricopeptide repeat 269 303 IPR002885 -
Cone20ag0308 693 NCBIfam pentatricopeptide repeat 66 99 IPR002885 -
Cone20ag0308 693 Gene3D Tetratricopeptide repeat domain 489 674 IPR011990 GO:0005515(InterPro)
Cone20ag0308 693 Gene3D Tetratricopeptide repeat domain 213 324 IPR011990 GO:0005515(InterPro)
Cone20ag0308 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Cone20ag0308 693 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 119 215 - -
Cone20ag0308 693 Gene3D Tetratricopeptide repeat domain 18 117 IPR011990 GO:0005515(InterPro)
Cone20ag0308 693 Gene3D Tetratricopeptide repeat domain 325 432 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0308 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0308 Cone-Chr20:1377345 Cone19ag0653 Cone-Chr19:5569211 8.49E-127 dispersed
Cone4ag1444 Cone-Chr4:11466972 Cone20ag0308 Cone-Chr20:1377345 1.78E-80 dispersed
Cone9ag0336 Cone-Chr9:1466213 Cone20ag0308 Cone-Chr20:1377345 4.80E-27 dispersed
Cone17ag0967 Cone-Chr17:7516067 Cone20ag0308 Cone-Chr20:1377345 3.43E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g612 . . . . . . . . Cmo05g00344 . . Cma05g00341 . . . . . Bhi04g00070 . . . . . Lcy13g1845 . . . . . . . . . . Cone20ag0308 . . . Cme03g01561 . . . . . . . . . . . . . . Car05g00286 Cpe11g00286 . . . . . . . . Cla08g01378 . . . . . . Lsi08g01262 . Chy03g01071 .