Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0311 ATGAGACTCGAGCGAAGCTCTGGAACAATGGCGAGCGACGAAGAAAGGGTCCTAGAGCATCAACTTGAGCTTCAACTGCAAGAGCAGAAGGAATCTCTTACTGCGCTAAATCAAGCCCTAGAATCCGACCCCTCCAATTCCGAGCTTCTCGAGGCAATTAAAGATTCCGAGGAAGGGCTTCTTCACCTGAAACGTGCTAGGTTATTAAAAGAGGCCGATTTAGTGCTACATGATATTGATAATAAGAGTGAAGATGTTAAGGTGGAGCCTCTTGATCCAGCTGATGTTGAAGAACCTGAATTGCTGGAAGACCGAAATTTCTCAGTTGGATCGAAATGTAGATTCCGGCACACTGATGGCCGTTGGTATAATGGTCTAGTCGTGGATGTGGAAAGTTCTGATTCCGCAAAGATCTCATTTCTCACTCCTACAACTGAAAATTTTTTGATATGCAAGTTCTTCCTGAAGCAAAGATGTCGATTTGGCTCTAATTGCCGCATGTCACATGGATTTGATATCCCATTATCGTCCCTGAAGAAGTATGTGCCGACAATGTGGGGACAGTCATTGGTGGGTTGTTCTATTTGGGCAGTCTCTGAGGGTGATAAAGGAGGTATTTGGAGAGAAGCTGAACTTGAATCATGGGACGATATTCATCAAGTTGGGCAAGTCGTTTTCAAAGATGATGGAAGTTCTGAAAAACTGGGGGAGGATGCTATAACACTATCCGAGTATGCTGAAATGAGCAATGGAGAAGAAGAAAGCGATTCAAGCCAGGAACAATATGATTCTAGTGATTATGAAGAAGGAGAAGAAGAGAGTCCACAGGGATTGGGATTTCTTGAAAGCACTGCCCGGCAGAGAGGCATCCAGACAGAAACTGCAATATTTGCTAAGTGGGAGAATCACACAAGGGGGATTGCTTCGAAGATGATGGCCAACATGGGTTACCGTTCAGGCATGGGTCTGGGTGCATGTGGTCAGGGAATGTTAAACCCTGTCCTTGTGAAGGTGCTTCCACCAAAGCAATCTCTTGACCATGCTCTTGAGTCCCAGGAGGAAGGGAAGGAGAGTAAAGACAACCAAGGTTGTAAGAAAAGAAGCAGGGGTGGTAAGAGAAAACGTGACAAGAAGTTTGCAGAAGCTGCCCGGTTAGCTAAGAAGGAAGAGGGATCGAGTCCGGATGTCTTTACACTCATCAACAACCAACTTGCAACATATAGTGCGCATTTGAATGGTGATGGTTCGTCTAAGAGACAAAAAGGTAAAGGTTCTGGAGATGGGAAAAAAGTGGATAGGATGACTATCGTTGCATTTGAGGATGAGGTGAATGATTTGAGGATGCGAATTGTGAAGCTTGAAGAAATGGCGAATAGAAACAAGAAGGAGAAGGTAGTTTTTGAGGCCGCAATGAGAAAGCTAAATGAGACTAGAAGGGCTTTGGCAGATGCCGAGGCGGGGCAGGCATCTGCTTCCAATGCAGTTACCAGCAGAGAGAAGGAGAAGAGATGGCTAAAATTTTAG 1524 45.08 MRLERSSGTMASDEERVLEHQLELQLQEQKESLTALNQALESDPSNSELLEAIKDSEEGLLHLKRARLLKEADLVLHDIDNKSEDVKVEPLDPADVEEPELLEDRNFSVGSKCRFRHTDGRWYNGLVVDVESSDSAKISFLTPTTENFLICKFFLKQRCRFGSNCRMSHGFDIPLSSLKKYVPTMWGQSLVGCSIWAVSEGDKGGIWREAELESWDDIHQVGQVVFKDDGSSEKLGEDAITLSEYAEMSNGEEESDSSQEQYDSSDYEEGEEESPQGLGFLESTARQRGIQTETAIFAKWENHTRGIASKMMANMGYRSGMGLGACGQGMLNPVLVKVLPPKQSLDHALESQEEGKESKDNQGCKKRSRGGKRKRDKKFAEAARLAKKEEGSSPDVFTLINNQLATYSAHLNGDGSSKRQKGKGSGDGKKVDRMTIVAFEDEVNDLRMRIVKLEEMANRNKKEKVVFEAAMRKLNETRRALADAEAGQASASNAVTSREKEKRWLKF 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1386205 1388801 - Conep20aG0032400.1 Cone20ag0311 460215

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0311 507 SMART c3hfinal6 147 171 IPR000571 GO:0046872(InterPro)
Cone20ag0311 507 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 10 507 - -
Cone20ag0311 507 MobiDBLite consensus disorder prediction 483 507 - -
Cone20ag0311 507 ProSiteProfiles Zinc finger C3H1-type profile. 150 172 IPR000571 GO:0046872(InterPro)
Cone20ag0311 507 MobiDBLite consensus disorder prediction 249 275 - -
Cone20ag0311 507 Coils Coil 436 463 - -
Cone20ag0311 507 Gene3D - 108 182 - -
Cone20ag0311 507 MobiDBLite consensus disorder prediction 347 365 - -
Cone20ag0311 507 SMART G-patch_5 302 348 IPR000467 GO:0003676(InterPro)
Cone20ag0311 507 MobiDBLite consensus disorder prediction 347 378 - -
Cone20ag0311 507 MobiDBLite consensus disorder prediction 248 277 - -
Cone20ag0311 507 Pfam CCCH-type zinc finger 150 169 IPR041367 -
Cone20ag0311 507 Coils Coil 467 487 - -
Cone20ag0311 507 MobiDBLite consensus disorder prediction 410 429 - -
Cone20ag0311 507 Coils Coil 10 43 - -
Cone20ag0311 507 ProSiteProfiles G-patch domain profile. 304 350 IPR000467 GO:0003676(InterPro)
Cone20ag0311 507 Pfam G-patch domain 304 346 IPR000467 GO:0003676(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0311 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g608 . Blo12g01042 . Bda03g00112 . . Bma04g00104 . Cmo05g00345 Cmo12g00324 . . . Car12g00354 Sed03g1654 Cpe07g00329 . Bhi04g00065 Tan02g2778 Cmetu03g2063 . Hepe10g0207 . Lcy13g1843 . . . . . . . . . . Cone20ag0311 . . . Cme03g01563 . . . . . . . . . . . . Cma12g00371 . Car05g00287 Cpe11g00287 . . . . . . . . Cla08g01377 Cam08g1847 Cec08g1425 Cco08g1558 Clacu08g1542 . Cre08g1325 Lsi08g01259 . Chy03g01073 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010406 1 1 1 1 0 1 2 1 1 1 0 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45576 PF14543 TAXi_N 2.10E-36 CL0129 Cone TF