Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0322 ATGCAGAGATTAAAAGCTTTGGTCGAGCGTAGGAAGTTTTCATTTCCGAGAGTGAGACAATCAGACGTTCTGGTTGAAGGAAGACCTAAATATAGAGCAGCTATTCTCAATAGGCCGTCGGCTCTCAGTGCTCTCACTACTTCGATGGCAGCTGGGTTGAAGAAATTGTATGAATATTGGGAAGAGAATTCAGATATTGGATTTTTCCTTATGAAGGGTAGTGGCCGGGCATTCTCTTCTGGTACCCATTTTGTTACTCTTTATCACTTGCTTAATGAAGGGAATGTTGAGGACTGTAAGATGTTTTTCCAGACACTATTATCGATTTGTCTATCTTCAAGGGACGTACCTGAAACCACATGTGGCTGTCCTGGATGGTATCACCATGGGAGCTGGGGCCGGAATTTCACTCCCAGGGATGTTCCGAGTGGTGTTTTGTCATCCAGATACTCAATTGGGTTCCACCCTGATGCTGGGGCTTCATTTTATCTATCTCGTCTTCCTTGTCACATAGGGGAGTACTTAGCTTTAACCGTGGACAAACTCAACGGTGCAGAAATGATTGCCTGTGGTCTTGCCTCACATTTCACACTAAATGCAGTTTGTTTTCTGTATTCTAATCCAGTTCTATTTTCTCGCTTGAATCTTGATTATCAGTACCTTATTATGCTGGCCACCTTTGACTGA 687 43.38 MQRLKALVERRKFSFPRVRQSDVLVEGRPKYRAAILNRPSALSALTTSMAAGLKKLYEYWEENSDIGFFLMKGSGRAFSSGTHFVTLYHLLNEGNVEDCKMFFQTLLSICLSSRDVPETTCGCPGWYHHGSWGRNFTPRDVPSGVLSSRYSIGFHPDAGASFYLSRLPCHIGEYLALTVDKLNGAEMIACGLASHFTLNAVCFLYSNPVLFSRLNLDYQYLIMLATFD 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1427324 1429437 + Conep20aG0033500.1 Cone20ag0322 460226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0322 228 Gene3D - 11 124 - -
Cone20ag0322 228 Pfam Enoyl-CoA hydratase/isomerase 151 199 IPR045004 -
Cone20ag0322 228 Pfam Enoyl-CoA hydratase/isomerase 32 105 IPR045004 -
Cone20ag0322 228 SUPERFAMILY ClpP/crotonase 21 196 IPR029045 -
Cone20ag0322 228 Gene3D - 148 202 - -
Cone20ag0322 228 PANTHER 3-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED 151 200 IPR032259 GO:0003860(PANTHER)|GO:0003860(InterPro)|GO:0006574(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0322 K05605 - - csv:101212576 189.889
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0322 Cone-Chr20:1427324 Cone4ag0464 Cone-Chr4:2055815 6.67E-22 dispersed
Cone17ag0981 Cone-Chr17:7565342 Cone20ag0322 Cone-Chr20:1427324 1.86E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g579 . Blo12g01051 . Bda03g00099 . . Bma04g00092 . . . Cma01g01668 . Car09g00357 . . . Cpe06g00293 . . . . . . . Cla05g01678 Cam05g1793 Cec05g1801 Cco05g1857 Clacu05g1780 Cmu05g1665 Cre05g1795 . . Cone17ag0981 Cone20ag0322 Lsi04g01339 . . . . . . . . Bpe04g00083 . . Sed05g1746 Cmo01g01717 . . . Car01g01282 . . Cpe02g00322 Bhi09g03011 Tan01g3558 Cmetu07g0567 . Hepe01g1963 Mch11g0500 . . . . . . . . . . . Cme07g00124
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0054893 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1