Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone20ag0323 | ATGTCGGACGAGGAGCACCATTTTGAATCCAAGGCCGATGCCGGAGCCTCCAAGACCTACCCTCAGCAAGCCGGAACCATCCGTAAGAACGGTTACATCGTCATCAAGAACCGTCCTTGCAAGGTTGTTGAGGTTTCTACTTCAAAGACTGGCAAGCATGGGCATGCAAAGTGTCACTTTGTTGGGATTGATATATTCACTGCTAAGAAGCTTGAGGATATTGTTCCTTCATCTCACAATTGTGATGTTCCCCATGTTAACCGCATTGATTATCAGCTGATCGACATATCTGAAGATGGATTTGTGAGTCTTTTAACCGATAATGGGAACACGAAGGATGACTTGAAGCTTCCAACTGATGAAAGTTTACTCACCCAGATCAAGGATGGATTTGCTGAAGGAAAGGATCTTGTTGTCTCAGTCATGGCTGCTATGGGAGAGGAACAGATTTGCGCCCTGAAGGACATTGGTCCAAAGAACTAA | 483 | 45.34 | MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRIDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDESLLTQIKDGFAEGKDLVVSVMAAMGEEQICALKDIGPKN | 160 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 1432030 | 1434079 | - | Conep20aG0033600.1 | Cone20ag0323 | 460227 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone20ag0323 | 160 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Cone20ag0323 | 160 | Gene3D | - | 86 | 159 | IPR012340 | - | |
| Cone20ag0323 | 160 | Pfam | Translation initiation factor 5A-like, N-terminal | 17 | 79 | IPR048670 | - | |
| Cone20ag0323 | 160 | SUPERFAMILY | Nucleic acid-binding proteins | 86 | 156 | IPR012340 | - | |
| Cone20ag0323 | 160 | SUPERFAMILY | Translation proteins SH3-like domain | 15 | 93 | IPR008991 | - | |
| Cone20ag0323 | 160 | Gene3D | - | 1 | 85 | IPR014722 | - | |
| Cone20ag0323 | 160 | ProSitePatterns | Eukaryotic initiation factor 5A hypusine signature. | 50 | 57 | IPR019769 | GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro) | |
| Cone20ag0323 | 160 | NCBIfam | translation initiation factor IF-5A | 17 | 153 | IPR001884 | GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro) | |
| Cone20ag0323 | 160 | SMART | eIF_5a_2 | 85 | 154 | IPR020189 | GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro) | |
| Cone20ag0323 | 160 | FunFam | Eukaryotic translation initiation factor 5A | 86 | 158 | - | - | |
| Cone20ag0323 | 160 | PIRSF | Transl_init_eIF5A | 1 | 157 | IPR001884 | GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro) | |
| Cone20ag0323 | 160 | FunFam | Eukaryotic translation initiation factor 5A | 1 | 85 | - | - | |
| Cone20ag0323 | 160 | PANTHER | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER | 1 | 157 | IPR001884 | GO:0003723(InterPro)|GO:0003746(PANTHER)|GO:0003746(InterPro)|GO:0006414(PANTHER)|GO:0043022(InterPro)|GO:0045901(InterPro) | |
| Cone20ag0323 | 160 | Pfam | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 85 | 154 | IPR020189 | GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro) | |
| Cone20ag0323 | 160 | CDD | S1_eIF5A | 86 | 156 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone19ag0922 | Cone-Chr19:7121433 | Cone20ag0323 | Cone-Chr20:1432030 | 6.03E-73 | dispersed | |
| Cone20ag0323 | Cone-Chr20:1432030 | Cone2ag0825 | Cone-Chr2:34254365 | 1.90E-105 | dispersed | |
| Cone17ag0983 | Cone-Chr17:7574352 | Cone20ag0323 | Cone-Chr20:1432030 | 3.70E-112 | wgd | |
| Cone20ag0323 | Cone-Chr20:1432030 | Cone4ag0600 | Cone-Chr4:2744791 | 1.45E-109 | wgd | |
| Cone20ag0323 | Cone-Chr20:1432030 | Cone7ag0570 | Cone-Chr7:2736971 | 2.06E-109 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone20ag0323 | K03263 | - | gmx:100820467 | 318.546 |