Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0324 ATGGGGTTGTTCCGGAAGTTCTTTTATCGGAAACCGCCGGAAGGACTTCTCGAGATTTCCGAGAGGGTTTATGTGTTCGATTTCTGTTTTACTACGGATGTTTTGGAAGACAATGAATATAAAGTCTACATTGGAGGAATAGTATCGCAACTGCGCAATCATCTACCCGATGCTTCGTACATGGTGTTTAATTTCCGAGAAGGAGATAACCAGAGCCAAATTGCTGATATATTATCAGATTACGACATGACTGTGATGGACTACCCTAGACAGTACGAAGGCTGTCCATTACTAACAATGGAGATGGTTCATCACTTTTTGAGGTCAAGTGAAAGCTGGCACTTACTCGGTCAACAAAACGTGCTTCTGATGCATTGTGAGAGGGGAGGGTGGGCCATCTTGGCGTTCATGCTAGCTGCTCTGTTGATTCATCGAAAGCAATATGCGGGAGAGCAGAAAACCTTGGACATGATTTACAAGCAAGCACCTAAGGAGCTTTTGCAATTGATGTCTGCTTTGAACCCCTTGCCTTCTCAATTGAGGTATCTTCAGTATGTTTCGAGGAGAAATGTGGCTTTGGAGTGGCCCCCACTTGATCGAGCACTTACTGTGGATTGTATTATAATTAGATTTATTCCTCGAATGGATAGTGATGGTGGCTGCCGTCCGATTTTTAGGATATATGGGCAGGATCCTTTAGCGGGTTCCGATCGGACTTCAAAAGTTCTCTTCTCCACGCCAAAGAGGAGCAAATTTGTTCAGTACTATAAACAGGATTGTGAACTAATTAAAATCGACATCCATTGCCATATCCAAGGGGATGTAGTTCTTGAGGCTATTAGTTTGGAAGAGGATCTAGAACGAGAGATGATGATGTTTCGAGTCATGTTCAATACAGCCTTCATAAGATCAAATATTTTGATGCTAAACCGTGATGAAATTGATATGTTATGGACAATTAAGGATCAATTTCCTAAGGATTTCAGAGCAGAGGTTCTTTTCTCGGAAATGGATACTGCTGCTTCTCGTTTTCCAGTTGAATTACCCAGCATTGAGGATAAAGAGGGCCTCCCTATCGAAGCATTTGCGAAAGTGAAAGAGATTTTCAGCAGTGTGGATTGGCTAGACCCAAAAAAGGATGTGTCACTAAATGTTCTCCGGCAAATCACAGCACCGGGTTTCCGTCAGGAAATGAAGGATCCCAGTTCTCCTGTTCATCCAGAGACAGGAAGAGTATCGCCCCAATCTACTCTTAAAGAAGTTAAAGCAGAAGCTAAAACATCAGAAGAAAATATCAAGACTACCCCTTCATTTGAAAACCAGACAAAACAATCTGAAAAGAACATCAAAATTCCTTCATCTGAGATTGGAACAGAACAATCTATTTCCTCCAAAGAGAACATCAAAATCCCCTCAGTTCAGAACAAGACAAAACAAACTGTTTCTCCTGAAGACAGCATCAAAAGTTCTTTGTTAGAGAAACAGACAGAACAATCTGTTTCCTTAGCAGATGAGATCAGAACCTCTTCATCAGAGAACCAGACAAAACAATCCATTTCTTCTTCATTCCAATCTTTAGCTACAAACTCAGAAAGAAGGAAGATGGAACCCCTTGAACTGCAGGTTCCAGTCCAAAGATCTACCCAATCTAAGATCATATCCCAGTGGATCCCACATATACCAGTTTCATTGCGAGGTTCATCTGTGCCTATTTCTAGATATCCTAGTGCTCCTTCTTCTCTGGGCATTACAGCACTACTGCAAGATCATGCTACATCTAACTCTAAACAAGTAATATCTCAACTTTCCACCTCTACTTCAATTCCTCTATTAGATGTACACAAACAAGTTCAGCCTGTGAGGCAACCTATTCCACCGCCATCACCACAAGCACCATCTTCAACTACCGAGATAACTTCAGCTGATCCTCCGCAGCGTCCATTCTTTAAACCGACGACAATTTCGCCGTCAGTCCCACTGCCTTCACCTGTCTTTCCTTCAGTCACAGTTTCACCTTCTTCTACTGATGATTTAATTTCAATACCTCCATCTCCGCCGCCACCAACTTCTTCACCAGGGGAATCCACATCTTCATCTGTCAAGAAGTCATCTTCAGCTCCTCCTCCTCCACCTCCTACCTCTTCTTCATTCAAGGACTCATTATTGCCCCCTCCCCCTTCTCCTCCGCCTCTTTCATCCAAAACCTCCCTTTCAACTTCCATTCCTCCTCCTCCTCCACCGCCCAAGGAACCACAATCAACTTCTACTTCTGCTTCCCCTCAGCCGCCTCCACCTCCACCTCCACCTCCTACCTTACGAAGATCTACAGTATCTTCAGCTCCACCACCAGCTCCTCCTCCCAGTATTGCTCTGAAGGATTCTTCTTCTAAAAATCAATCACAGGCTCCTCATATTCCACCTCCTCCTGCTCCTGTGAAAGGATTAGTAAAATCCAGTGGTGCATCTCCCAATGCTAATGTACCTGCAATTCCTGGCCCCCCTTCTAGTGCTCCTTTCAATTTAAAGGGACGGGCCGCATCACGCTCAAGTGCCAAGAATCAGGCTTTATCTAGAAAGAGCAATCTCAAGCCGTATCATTGGCTAAAGTTAACAAGGGCCATGCAAGGAAGCTTATGGGCTGAAGCACAAAAAGCTGATGAAGCTTCCAAGGCTCCAGAGTTTGATATGTCAGAAATTGAGAGTCTTTTCTCCATCGCAGCTCCAAACTCAGATAATGGCTATGGATCCGAGAAGTCAAATCGCCGTGCATCGGGTCCTAAAGTCGAGAAAGTTCAGCTGATTGAGCTGAGACGGGCATATAATTGTGAAATCATGCTTACCAAGGTTAAGATACCCTTGCCTGATTTGATGAGCTCAGTCCTTGCCTTGGATGATTCAGCATTGGATGTCGATCAGGTTGAGAACCTTATTAAGTTTTGTCCAACAAAGGAAGAGATGGAACAACTGAAGGCTTATACTGGAGATAAGGAAAATTTGGGAAAATGTGAGCAGTTCTTTTTAGAATTAATGAAAGTACCAAGGATGGAGGCGAAGCTACAAGTTTTTTTGTTTAAGATACAATTCCGTTCTCAGGTTTCTGACCTTAGAAATAGTCTGAATACTGTGAACTCTGCATCTGAAGAGATCAGAAGTTCGGCCAAGTTGAGAAGAATAATGCAAACTATTCTTTCCCTGGGCAGTGCTCTAAACCATGGAACTGCAAGAGGTTCTGCCATTGGATTTCGGCTGGATAGTCTTCTTAAACTCACTGATACTCGAGTCCGAAACAACAAGATGACTCTCATGCATTATTTGTGTAAGGTGCTTGCTGAAAAGCTACCAGAACTTCTAGATTTTCATAAAGATCTTGTGAGTTTGGAAGCTTCTACAAAGATACAATTGAAGTATTTGGCAGAGGAAATGCAAGCCATTAGTAAAGGGCTTGAGAAGGTTGTACAGGAATTGACTTCCTCGGAAAATGATGGCCCTGTTTCAGAATACTTTTGTAAGACTTTAAAGGAATTCCTTAGCCATGCTGAAGCAGATGTGAGGTGTTTGGCTTCACTTTATTCTGGTGTGGGTAGAAATGCAGATGCCTTAGCTCTTTATTTTGGAGAAGATCCGGCTCGTTGTCCATTTGAGCAAGTTGTCTCCACCTTGCAAAATTTTGTGAGAATGTTTGATGGAGCTCATGAGGAAAACTGCAAGAAAATTGAATTTGAAAAGAAGAAAGCGCAAAAAGAAGCTGAAAATGAGAAGATGAAGATAAGCTCTCCAAGAAAGGATCCTGAACGCTTGATGCGGAGTCCAACAAAAAGCAGCAGCCTCAAATGA 3834 42.91 MGLFRKFFYRKPPEGLLEISERVYVFDFCFTTDVLEDNEYKVYIGGIVSQLRNHLPDASYMVFNFREGDNQSQIADILSDYDMTVMDYPRQYEGCPLLTMEMVHHFLRSSESWHLLGQQNVLLMHCERGGWAILAFMLAALLIHRKQYAGEQKTLDMIYKQAPKELLQLMSALNPLPSQLRYLQYVSRRNVALEWPPLDRALTVDCIIIRFIPRMDSDGGCRPIFRIYGQDPLAGSDRTSKVLFSTPKRSKFVQYYKQDCELIKIDIHCHIQGDVVLEAISLEEDLEREMMMFRVMFNTAFIRSNILMLNRDEIDMLWTIKDQFPKDFRAEVLFSEMDTAASRFPVELPSIEDKEGLPIEAFAKVKEIFSSVDWLDPKKDVSLNVLRQITAPGFRQEMKDPSSPVHPETGRVSPQSTLKEVKAEAKTSEENIKTTPSFENQTKQSEKNIKIPSSEIGTEQSISSKENIKIPSVQNKTKQTVSPEDSIKSSLLEKQTEQSVSLADEIRTSSSENQTKQSISSSFQSLATNSERRKMEPLELQVPVQRSTQSKIISQWIPHIPVSLRGSSVPISRYPSAPSSLGITALLQDHATSNSKQVISQLSTSTSIPLLDVHKQVQPVRQPIPPPSPQAPSSTTEITSADPPQRPFFKPTTISPSVPLPSPVFPSVTVSPSSTDDLISIPPSPPPPTSSPGESTSSSVKKSSSAPPPPPPTSSSFKDSLLPPPPSPPPLSSKTSLSTSIPPPPPPPKEPQSTSTSASPQPPPPPPPPPTLRRSTVSSAPPPAPPPSIALKDSSSKNQSQAPHIPPPPAPVKGLVKSSGASPNANVPAIPGPPSSAPFNLKGRAASRSSAKNQALSRKSNLKPYHWLKLTRAMQGSLWAEAQKADEASKAPEFDMSEIESLFSIAAPNSDNGYGSEKSNRRASGPKVEKVQLIELRRAYNCEIMLTKVKIPLPDLMSSVLALDDSALDVDQVENLIKFCPTKEEMEQLKAYTGDKENLGKCEQFFLELMKVPRMEAKLQVFLFKIQFRSQVSDLRNSLNTVNSASEEIRSSAKLRRIMQTILSLGSALNHGTARGSAIGFRLDSLLKLTDTRVRNNKMTLMHYLCKVLAEKLPELLDFHKDLVSLEASTKIQLKYLAEEMQAISKGLEKVVQELTSSENDGPVSEYFCKTLKEFLSHAEADVRCLASLYSGVGRNADALALYFGEDPARCPFEQVVSTLQNFVRMFDGAHEENCKKIEFEKKKAQKEAENEKMKISSPRKDPERLMRSPTKSSSLK 1277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1435871 1441747 + Conep20aG0033700.1 Cone20ag0324 460228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0324 1277 Pfam Formin Homology 2 Domain 857 1228 IPR015425 -
Cone20ag0324 1277 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 202 337 IPR035892 -
Cone20ag0324 1277 MobiDBLite consensus disorder prediction 1243 1277 - -
Cone20ag0324 1277 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Cone20ag0324 1277 MobiDBLite consensus disorder prediction 394 534 - -
Cone20ag0324 1277 SUPERFAMILY Formin homology 2 domain (FH2 domain) 781 1247 - -
Cone20ag0324 1277 MobiDBLite consensus disorder prediction 430 531 - -
Cone20ag0324 1277 Coils Coil 1235 1257 - -
Cone20ag0324 1277 SMART it6_source 610 1277 IPR015425 -
Cone20ag0324 1277 SMART PTEN_C2_2 197 336 IPR014020 -
Cone20ag0324 1277 MobiDBLite consensus disorder prediction 704 732 - -
Cone20ag0324 1277 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Cone20ag0324 1277 Gene3D Protein tyrosine phosphatase superfamily 15 199 IPR029021 -
Cone20ag0324 1277 Gene3D Formin, FH2 domain 871 1263 IPR042201 -
Cone20ag0324 1277 PRINTS Proline rich extensin signature 618 634 - -
Cone20ag0324 1277 PRINTS Proline rich extensin signature 707 724 - -
Cone20ag0324 1277 PRINTS Proline rich extensin signature 726 751 - -
Cone20ag0324 1277 PRINTS Proline rich extensin signature 654 675 - -
Cone20ag0324 1277 PRINTS Proline rich extensin signature 681 697 - -
Cone20ag0324 1277 ProSiteProfiles C2 tensin-type domain profile. 199 337 IPR014020 -
Cone20ag0324 1277 PANTHER FORMIN-J 742 1253 IPR051144 -
Cone20ag0324 1277 MobiDBLite consensus disorder prediction 842 858 - -
Cone20ag0324 1277 Gene3D - 200 340 - -
Cone20ag0324 1277 MobiDBLite consensus disorder prediction 619 858 - -
Cone20ag0324 1277 MobiDBLite consensus disorder prediction 1243 1268 - -
Cone20ag0324 1277 ProSiteProfiles Formin homology-2 (FH2) domain profile. 852 1253 IPR015425 -
Cone20ag0324 1277 MobiDBLite consensus disorder prediction 739 789 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0324 Cone-Chr20:1435871 Cone2ag0575 Cone-Chr2:3333078 0 dispersed
Cone17ag0984 Cone-Chr17:7577492 Cone20ag0324 Cone-Chr20:1435871 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0324 K28090 - mdm:103421015 711.449