Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone20ag0325 | ATGGAGGAGAGGCATATTTTGTTTGACAAGTATGAGATGGGGAGGTTATTAGGCAAAGGGACTTTCGCAAAGGTTTACTATGGAAAGGAGATTACCTCCAATGAAAGTGTCGCCGTTAAGATCATCAACAAAGATCAGGTGAAGAAGGAAGGCATGATGGATCAGATCAAGCGCGAGATCTCTGTTATGCGCATGGTCCGCCACCCGAACGTCGTCGAGCTAAAGGAGGTTATGGCTACCAAGACGAAGATCTTCTTTATCATGGAGTACGTTCGCGGTGGCGAGCTCTTCGCTAAAGTTGCGAAAGGGAAGCTCAAAGAAGATCAAGCGCGCAAATACTTCCAGCAATTGATCAGCGCCGTTGATTTCTGCCACAGCAGAGGCGTCTATCACCGCGATCTGAAACCTGAAAATCTGTTAGTCGACGAGAACGAAGATCTGAAAATCTCCGATTTCGGCCTCTCAGCTTTGCCAGAGCAGTTACGCAACGATGGACTTCTGCACACGCAGTGCGGCACTCCTGCTTACGTGGCACCTGAAGTCCTGAGGAGAAAAGGATACGACGGTTCGAGAGCTGATATTTGGTCATGCGGCGTTGTGTTGTTCGTCTTGCTCGCTGGATACCTTCCTTTTCAAGACGAGAATATCATGAATATGTATAAGAAAGTCTTCAAAGCTGAATTTCAATGTCCGCCTTGGTTCTCGCCTGAATCGAAGCGTCTGATCTCTAAACTCCTCGTCGTCGATCCAGATCGACGAATTACTATTCCGGGAATAATGCGTGTTCCCTGGTTTCTACGGAAGTTTACAAGACCGCCGTCTTTCTCCTGCTTGAACGATGCAATTTCAGAGAAATTAAGACAGGAGGAGATCACTGAAGCAGAGAGTCCTACACAATCAACGCCTAAATTTTTCAATGCTTTCAACTTCATATCGTCCATGTCTTCTGGATTTGATTTATCGAGTCTGTTCGAGAAGAAGAGGAAGTCCGGATCGATGTTTACGTCGAGGAGTTCTGCGTCGGCGATTATGGAGAAGATTGAGAAGGTCGCCAAGGGGCTAAGCTTTAAGGTATCGGAGGTTGATGACTTTAAGCTAAGGTTGCAAGGAACATCGGAGGGACGGAAAGGAACTCTTTCTGTGACAGCGGAGGTTTTCGAGGTTGCGCCGGAAGTCGCCATTGTTGAGTTCTCGAAGTCCGCCGGCGATACTTTGGAGTACACCAAGTTCTGTGAGGAAGACGTTCGGACGGCGTTGAAAGACATAGTTTGGACGTGGCAAGGTGATTCAATGTGTGACAGTAACGGAATTAACGGTGACGTTGACGTCGAGTAA | 1335 | 47.49 | MEERHILFDKYEMGRLLGKGTFAKVYYGKEITSNESVAVKIINKDQVKKEGMMDQIKREISVMRMVRHPNVVELKEVMATKTKIFFIMEYVRGGELFAKVAKGKLKEDQARKYFQQLISAVDFCHSRGVYHRDLKPENLLVDENEDLKISDFGLSALPEQLRNDGLLHTQCGTPAYVAPEVLRRKGYDGSRADIWSCGVVLFVLLAGYLPFQDENIMNMYKKVFKAEFQCPPWFSPESKRLISKLLVVDPDRRITIPGIMRVPWFLRKFTRPPSFSCLNDAISEKLRQEEITEAESPTQSTPKFFNAFNFISSMSSGFDLSSLFEKKRKSGSMFTSRSSASAIMEKIEKVAKGLSFKVSEVDDFKLRLQGTSEGRKGTLSVTAEVFEVAPEVAIVEFSKSAGDTLEYTKFCEEDVRTALKDIVWTWQGDSMCDSNGINGDVDVE | 444 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 1450077 | 1451868 | + | Conep20aG0033900.1 | Cone20ag0325 | 460229 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone20ag0325 | 444 | Gene3D | Kinase associated domain 1, KA1 | 299 | 425 | - | - | |
Cone20ag0325 | 444 | ProSiteProfiles | NAF domain profile. | 300 | 325 | IPR018451 | GO:0007165(InterPro) | |
Cone20ag0325 | 444 | Pfam | Protein kinase domain | 11 | 265 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone20ag0325 | 444 | ProSiteProfiles | Protein kinase domain profile. | 11 | 265 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone20ag0325 | 444 | Pfam | NAF domain | 302 | 358 | IPR004041 | GO:0007165(InterPro) | |
Cone20ag0325 | 444 | Gene3D | Transferase(Phosphotransferase) domain 1 | 91 | 271 | - | - | |
Cone20ag0325 | 444 | FunFam | Non-specific serine/threonine protein kinase | 2 | 90 | - | - | |
Cone20ag0325 | 444 | ProSitePatterns | Protein kinases ATP-binding region signature. | 17 | 40 | IPR017441 | GO:0005524(InterPro) | |
Cone20ag0325 | 444 | CDD | STKc_SnRK3 | 10 | 264 | - | - | |
Cone20ag0325 | 444 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 4 | 413 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Cone20ag0325 | 444 | Gene3D | Phosphorylase Kinase; domain 1 | 2 | 90 | - | - | |
Cone20ag0325 | 444 | FunFam | Non-specific serine/threonine protein kinase | 300 | 424 | - | - | |
Cone20ag0325 | 444 | CDD | CIPK_C | 306 | 420 | - | - | |
Cone20ag0325 | 444 | FunFam | Non-specific serine/threonine protein kinase | 4 | 303 | - | - | |
Cone20ag0325 | 444 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 129 | 141 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cone20ag0325 | 444 | SUPERFAMILY | Protein kinase-like (PK-like) | 7 | 301 | IPR011009 | - | |
Cone20ag0325 | 444 | SMART | serkin_6 | 11 | 265 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone11ag1292 | Cone-Chr11:9565582 | Cone20ag0325 | Cone-Chr20:1450077 | 1.10E-42 | dispersed | |
Cone18ag0616 | Cone-Chr18:3122230 | Cone20ag0325 | Cone-Chr20:1450077 | 6.56E-196 | dispersed | |
Cone20ag0325 | Cone-Chr20:1450077 | Cone3ag0468 | Cone-Chr3:2270645 | 9.41E-175 | dispersed | |
Cone17ag0986 | Cone-Chr17:7606899 | Cone20ag0325 | Cone-Chr20:1450077 | 7.94E-304 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
82536 | PF04484 | QWRF | 4.00E-107 | No_clan | Cone | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone20ag0325 | - | - | - | 0.0 |