Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0325 ATGGAGGAGAGGCATATTTTGTTTGACAAGTATGAGATGGGGAGGTTATTAGGCAAAGGGACTTTCGCAAAGGTTTACTATGGAAAGGAGATTACCTCCAATGAAAGTGTCGCCGTTAAGATCATCAACAAAGATCAGGTGAAGAAGGAAGGCATGATGGATCAGATCAAGCGCGAGATCTCTGTTATGCGCATGGTCCGCCACCCGAACGTCGTCGAGCTAAAGGAGGTTATGGCTACCAAGACGAAGATCTTCTTTATCATGGAGTACGTTCGCGGTGGCGAGCTCTTCGCTAAAGTTGCGAAAGGGAAGCTCAAAGAAGATCAAGCGCGCAAATACTTCCAGCAATTGATCAGCGCCGTTGATTTCTGCCACAGCAGAGGCGTCTATCACCGCGATCTGAAACCTGAAAATCTGTTAGTCGACGAGAACGAAGATCTGAAAATCTCCGATTTCGGCCTCTCAGCTTTGCCAGAGCAGTTACGCAACGATGGACTTCTGCACACGCAGTGCGGCACTCCTGCTTACGTGGCACCTGAAGTCCTGAGGAGAAAAGGATACGACGGTTCGAGAGCTGATATTTGGTCATGCGGCGTTGTGTTGTTCGTCTTGCTCGCTGGATACCTTCCTTTTCAAGACGAGAATATCATGAATATGTATAAGAAAGTCTTCAAAGCTGAATTTCAATGTCCGCCTTGGTTCTCGCCTGAATCGAAGCGTCTGATCTCTAAACTCCTCGTCGTCGATCCAGATCGACGAATTACTATTCCGGGAATAATGCGTGTTCCCTGGTTTCTACGGAAGTTTACAAGACCGCCGTCTTTCTCCTGCTTGAACGATGCAATTTCAGAGAAATTAAGACAGGAGGAGATCACTGAAGCAGAGAGTCCTACACAATCAACGCCTAAATTTTTCAATGCTTTCAACTTCATATCGTCCATGTCTTCTGGATTTGATTTATCGAGTCTGTTCGAGAAGAAGAGGAAGTCCGGATCGATGTTTACGTCGAGGAGTTCTGCGTCGGCGATTATGGAGAAGATTGAGAAGGTCGCCAAGGGGCTAAGCTTTAAGGTATCGGAGGTTGATGACTTTAAGCTAAGGTTGCAAGGAACATCGGAGGGACGGAAAGGAACTCTTTCTGTGACAGCGGAGGTTTTCGAGGTTGCGCCGGAAGTCGCCATTGTTGAGTTCTCGAAGTCCGCCGGCGATACTTTGGAGTACACCAAGTTCTGTGAGGAAGACGTTCGGACGGCGTTGAAAGACATAGTTTGGACGTGGCAAGGTGATTCAATGTGTGACAGTAACGGAATTAACGGTGACGTTGACGTCGAGTAA 1335 47.49 MEERHILFDKYEMGRLLGKGTFAKVYYGKEITSNESVAVKIINKDQVKKEGMMDQIKREISVMRMVRHPNVVELKEVMATKTKIFFIMEYVRGGELFAKVAKGKLKEDQARKYFQQLISAVDFCHSRGVYHRDLKPENLLVDENEDLKISDFGLSALPEQLRNDGLLHTQCGTPAYVAPEVLRRKGYDGSRADIWSCGVVLFVLLAGYLPFQDENIMNMYKKVFKAEFQCPPWFSPESKRLISKLLVVDPDRRITIPGIMRVPWFLRKFTRPPSFSCLNDAISEKLRQEEITEAESPTQSTPKFFNAFNFISSMSSGFDLSSLFEKKRKSGSMFTSRSSASAIMEKIEKVAKGLSFKVSEVDDFKLRLQGTSEGRKGTLSVTAEVFEVAPEVAIVEFSKSAGDTLEYTKFCEEDVRTALKDIVWTWQGDSMCDSNGINGDVDVE 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1450077 1451868 + Conep20aG0033900.1 Cone20ag0325 460229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0325 444 Gene3D Kinase associated domain 1, KA1 299 425 - -
Cone20ag0325 444 ProSiteProfiles NAF domain profile. 300 325 IPR018451 GO:0007165(InterPro)
Cone20ag0325 444 Pfam Protein kinase domain 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0325 444 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0325 444 Pfam NAF domain 302 358 IPR004041 GO:0007165(InterPro)
Cone20ag0325 444 Gene3D Transferase(Phosphotransferase) domain 1 91 271 - -
Cone20ag0325 444 FunFam Non-specific serine/threonine protein kinase 2 90 - -
Cone20ag0325 444 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524(InterPro)
Cone20ag0325 444 CDD STKc_SnRK3 10 264 - -
Cone20ag0325 444 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 413 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone20ag0325 444 Gene3D Phosphorylase Kinase; domain 1 2 90 - -
Cone20ag0325 444 FunFam Non-specific serine/threonine protein kinase 300 424 - -
Cone20ag0325 444 CDD CIPK_C 306 420 - -
Cone20ag0325 444 FunFam Non-specific serine/threonine protein kinase 4 303 - -
Cone20ag0325 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0325 444 SUPERFAMILY Protein kinase-like (PK-like) 7 301 IPR011009 -
Cone20ag0325 444 SMART serkin_6 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1292 Cone-Chr11:9565582 Cone20ag0325 Cone-Chr20:1450077 1.10E-42 dispersed
Cone18ag0616 Cone-Chr18:3122230 Cone20ag0325 Cone-Chr20:1450077 6.56E-196 dispersed
Cone20ag0325 Cone-Chr20:1450077 Cone3ag0468 Cone-Chr3:2270645 9.41E-175 dispersed
Cone17ag0986 Cone-Chr17:7606899 Cone20ag0325 Cone-Chr20:1450077 7.94E-304 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82536 PF04484 QWRF 4.00E-107 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0325 - - - 0.0