Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0326 ATGGGATCGAATTCGATATGGGTCGACACTTCTCTCGAGCTTAATCTCGTTCCTTCCCCGCAACCCCACAGAGATCCGATGAAAAAAGAAGCATCAAACGACGGGGTATTGGAAGAAGCGTTGAGCCGGACAATTTCGGAGAACAAGAAGCTGACGAAGATGTTGAGTGTGATGCAAGAGAATTGCAATGTTTTGCAGAACCAAGTGATGGAGTTGATGATGAGCAGAAACTCTGAAAGACCGAGGAAGAGAAAGCCGGAAGATGGTGGTGGAGAAGAAAACCGGAATGGTATAATCGGGGTAATCAATGGATCGAATAATGAACAGTGCAGTTCTAGTGATGAAGAGTGCTCCTTCAAAAGGATCAAAGAAAGCAACAAGCCTAAGGTTTCTAGGGTTAAATTTTTCCCTATCAAGCCTTCGGATCCAAGCCTGATTGTGAAGGATGGATATCAATGGAGGAAATATGGTCAAAAGGTTACTAGGGACAATCCTTCTCCAAGGGCTTACTATAAATGTTCCTTTGCCCCAAGCTGCCCAGTCAAAAAGAAGGTGCAAAGAAGTGCTGAAGACCCATCAGTGCTGGTAGCTACTTATGAAGGAGATCACAATCATATGAATCCAAACTGTCCACCCCCAATCTCATTAGGTTCAAACCGATTAGGCGATCAAACCCTAAACATTGTTTCGAGTCCAGTTTCGGCCAACAATATGAGACCTTCCACAACTGGTTCCAGTACTATTACCCTGGATTTAATCCAACACACATCGTGCGATGGAACTACCACTAAATCATTCATGCCGGAAATCGAAGAACAACAACAGGTCCCAACGGATATACAACATTTTTTGGTACAACAAATGGCTTCCTCTTTGACTAAAGATCCCAGTTTCGCAGAAGCACTTGCCTCAGCGATTTCAGGAAGAATTTTAGAGAATAATCGGATATTGAGAGATGGAAATCAATTTGGAAAGTGTGTTCCTGAAACTAGTAAGTAA 999 43.04 MGSNSIWVDTSLELNLVPSPQPHRDPMKKEASNDGVLEEALSRTISENKKLTKMLSVMQENCNVLQNQVMELMMSRNSERPRKRKPEDGGGEENRNGIIGVINGSNNEQCSSSDEECSFKRIKESNKPKVSRVKFFPIKPSDPSLIVKDGYQWRKYGQKVTRDNPSPRAYYKCSFAPSCPVKKKVQRSAEDPSVLVATYEGDHNHMNPNCPPPISLGSNRLGDQTLNIVSSPVSANNMRPSTTGSSTITLDLIQHTSCDGTTTKSFMPEIEEQQQVPTDIQHFLVQQMASSLTKDPSFAEALASAISGRILENNRILRDGNQFGKCVPETSK 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1457470 1459376 + Conep20aG0034000.1 Cone20ag0326 460230

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0326 332 ProSiteProfiles WRKY domain profile. 142 208 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0326 332 FunFam WRKY transcription factor 40 132 209 - -
Cone20ag0326 332 Gene3D WRKY domain 137 209 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0326 332 Coils Coil 48 68 - -
Cone20ag0326 332 SUPERFAMILY WRKY DNA-binding domain 145 208 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0326 332 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 34 310 IPR044810 GO:0003700(InterPro)
Cone20ag0326 332 Pfam WRKY DNA -binding domain 148 205 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0326 332 MobiDBLite consensus disorder prediction 76 92 - -
Cone20ag0326 332 SMART WRKY_cls 147 207 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0326 332 MobiDBLite consensus disorder prediction 74 105 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0326 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0985 Cone-Chr17:7593272 Cone20ag0326 Cone-Chr20:1457470 7.88E-178 dispersed
Cone20ag0326 Cone-Chr20:1457470 Cone3ag0945 Cone-Chr3:4905876 9.62E-22 dispersed
Cone20ag0326 Cone-Chr20:1457470 Cone20ag1141 Cone-Chr20:7768393 6.27E-54 wgd
Cone20ag0326 Cone-Chr20:1457470 Cone4ag1749 Cone-Chr4:12857921 1.38E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g273 . . . . Bpe02g01186 . . . Cmo05g00612 . . . . Car12g00228 Sed01g1257 Cpe07g00208 . Bhi04g00863 Tan02g2552 Cmetu03g1677 . Hepe10g0374 . Lcy13g1423 . . . . . . . . . . Cone20ag0326 . . . . Blo17g00064 Blo18g00076 . . Bpe14g00521 . . . . . . . Cma12g00245 . Car05g00531 Cpe11g00514 . . . . . . . . Cla08g01212 Cam08g1674 Cec08g1252 Cco08g1370 Clacu08g1372 . Cre08g1156 . Csa02g02260 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009154 1 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 0 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45577 PF13912 zf-C2H2_6 2.00E-12 CL0361 Cone TF