Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0334 ATGGCTAATAAGCATGATAGTGATGATGTTGATCACGATGAAGATGAAGATGAAGATGATCGATTTCCAGCCGGAATGCGAGTGTTGGCCATCGATGCCGATCCAGTCAGTCTCGAAGCATTAGGGACGCTTCTTCTTCAATGCCAATACCAAGTGATTAAGAGTAAATGTCTATCAGAAGCACTGAATTTATTGAGAGAATACGAGAAAATATTTGACATAATTATAACCGATACCAAGTTCAAGGATATGGATCCATTTAAGCTGCTCGAAATTATCAGACTCGAGTTCGATACACCTGTTATTATGATGTCTTCATGCGATGACAAGAAGCTAGTAATGAAAGGAATTATCAAAGGAGCATGTGGTTATCTACTCAAACCGATTCGAGTCGAGGAGTTGAAGATTATATGGCAACATGTTATCCCGAAAAGGGATCCTAAAAGTAAGAAAAATGGGGACTACAATGAAGCCAAGTTGGAACGGAAACAGTCCGAGGAAGAGCAGGAACAAGACAAAGAGGAGGAAGAACATGTTCAAGAAGACAACAATGAGAGGAAGGAGAAGGAGAAGGAACTTCATCAGATTACCCAGAAGAAGACTAGGGTTGTTTGGTGTGCTGAGTTGCATAGAAAATTTGTAGCTGCTATTAATGAGTTGGGATTAAACAATGCTGTGCCGAAAAATATTCTAGAATTGATGAATGTGGAAAATCTTTCCAGGGAAAATGTAGCTAGCCATCTCCAGAAATATAGGATTTACCTTAAGAGAAGTGGATTACAGCATCAATCTAGTATGGGGAGTATTTTGAGTTGCAATGATCGTTCGCCGTATTGGGAAACTGGATCGTGTGGCCAGATCGGGAATGTTCCAACCTTTGCGGGACCTGGTCATTATGAGAACAACAGCATGGCATTTGGATCCTACCCACCTAGTCAGAGGCTAAGTAGATTAAGCTCTCCTAGTGTGAGTAACCAAAGCCCGATCCAGACCCATACATGCTCGAGAATTCTCCAAGTGGCCGGCAACTCGCACCCTGCCGGACATACCAGAAGCCATAGCGTTCCCATGGGAATGAGCGGGACATATCAGCTTGATCAACAAAAGCCCCAGCACCTTGGAAGCATGACCCTTTTGCCTGTTCTGGGTGGGGCCCAGGACGGTTATAACAATCCTAGTTTCCATGACGTTTCTAACGGCTCGTTTTTGGGTTTGAGTTCTGTTCAGTCTATGAGGGTGCAAACAGGATCACAACTACGTAATGTTGCTTGGGACATTTCTAGGATTAATGCGGTGCCGCTGGATCAGACAGAAGATTCGATAGGAGAGTTGCACTACGTCCATCATGATCCCTTCAAGGGGTTGTATGGTTTGGTGAATCCTATGATCTCGATGGACGAAGATATCGAAATGTTCGACGGATGCAACAATCCAACAGTCTTGGAGAGAAATGTGGATTTCAGTTTGATTGGTCAGCAAGTGATGAATCATGAAGGATTGATGCATAATCTAGCTTCCATAGATGCAGTGTCGAATCTGCAAGGCGGATTGGTTCCTAGTAGTATTACCACCATGGAAGAAGTACAATATGCACTGATGAATCTGCAGGATTTTGAAGGAGAAGGGTAA 1629 43.28 MANKHDSDDVDHDEDEDEDDRFPAGMRVLAIDADPVSLEALGTLLLQCQYQVIKSKCLSEALNLLREYEKIFDIIITDTKFKDMDPFKLLEIIRLEFDTPVIMMSSCDDKKLVMKGIIKGACGYLLKPIRVEELKIIWQHVIPKRDPKSKKNGDYNEAKLERKQSEEEQEQDKEEEEHVQEDNNERKEKEKELHQITQKKTRVVWCAELHRKFVAAINELGLNNAVPKNILELMNVENLSRENVASHLQKYRIYLKRSGLQHQSSMGSILSCNDRSPYWETGSCGQIGNVPTFAGPGHYENNSMAFGSYPPSQRLSRLSSPSVSNQSPIQTHTCSRILQVAGNSHPAGHTRSHSVPMGMSGTYQLDQQKPQHLGSMTLLPVLGGAQDGYNNPSFHDVSNGSFLGLSSVQSMRVQTGSQLRNVAWDISRINAVPLDQTEDSIGELHYVHHDPFKGLYGLVNPMISMDEDIEMFDGCNNPTVLERNVDFSLIGQQVMNHEGLMHNLASIDAVSNLQGGLVPSSITTMEEVQYALMNLQDFEGEG 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1496150 1498247 - Conep20aG0034800.1 Cone20ag0334 460238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0334 542 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 197 256 IPR017930 -
Cone20ag0334 542 FunFam Two-component response regulator 196 258 - -
Cone20ag0334 542 Pfam Myb-like DNA-binding domain 202 252 IPR001005 -
Cone20ag0334 542 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 271 IPR045279 GO:0009736(InterPro)
Cone20ag0334 542 Coils Coil 148 199 - -
Cone20ag0334 542 Gene3D - 196 258 - -
Cone20ag0334 542 MobiDBLite consensus disorder prediction 179 194 - -
Cone20ag0334 542 Gene3D - 25 181 - -
Cone20ag0334 542 SUPERFAMILY CheY-like 25 149 IPR011006 -
Cone20ag0334 542 ProSiteProfiles Response regulatory domain profile. 27 142 IPR001789 GO:0000160(InterPro)
Cone20ag0334 542 MobiDBLite consensus disorder prediction 1 20 - -
Cone20ag0334 542 Pfam Response regulator receiver domain 28 135 IPR001789 GO:0000160(InterPro)
Cone20ag0334 542 SUPERFAMILY Homeodomain-like 197 257 IPR009057 -
Cone20ag0334 542 CDD REC_typeB_ARR-like 28 142 - -
Cone20ag0334 542 MobiDBLite consensus disorder prediction 146 194 - -
Cone20ag0334 542 SMART REC_2 26 138 IPR001789 GO:0000160(InterPro)
Cone20ag0334 542 NCBIfam myb-like DNA-binding domain, SHAQKYF class 200 253 IPR006447 GO:0003677(InterPro)
Cone20ag0334 542 MobiDBLite consensus disorder prediction 146 169 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0334 Cone-Chr20:1496150 Cone2ag0549 Cone-Chr2:3080122 6.70E-67 dispersed
Cone20ag0334 Cone-Chr20:1496150 Cone4ag1755 Cone-Chr4:12894931 2.37E-70 wgd
Cone20ag0334 Cone-Chr20:1496150 Cone4ag0611 Cone-Chr4:2810489 8.50E-68 wgd
Cone20ag0334 Cone-Chr20:1496150 Cone7ag1672 Cone-Chr7:11219297 6.42E-69 wgd
Cone20ag0334 Cone-Chr20:1496150 Cone7ag0579 Cone-Chr7:2779087 1.91E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45578 PF12697 Abhydrolase_6 1.60E-14 CL0028 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0334 K14491 - cit:102621408 258.455