Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0337 ATGGCAAGGCCGCAACAGCGATACCGAGGCGTTAGACAACGGCATTGGGGCTCATGGGTCTCCGAAATTCGCCACCCTTTATTGAAAACGAGAATTTGGCTAGGCACATTCGAGACGGCCGAAGATGCAGCGAGAGCCTACGACGAAGTGGCTAGACTCATGTGCGGACCCAGAGCCCGAACTAACTTCCCTTATAACCCAAACGAGTTGAAGACATCCTCTTCAAAGCTTCTCTCTGCAACTTTGACCGCTAAGCTTCACAAGTGTTATATAGCTTCTCTTCAAATGACAGAAAAATCATCTCTACAAGAAGTTGAAGAACCACTACTACTACCTCCAAGCGGGAGTGCTGATAACGGTTTCTACAAACCGGGCATGAAACTTCCGGAAACGAGAACTGCGAACGAGGATGCTCGAGAATTGGAGGGTAAATGGATGGTCAAGAAAGTTCATAATGAAATTACACATTTGAAGGCTCTTGAAGAGGACCACATTGAGCAGATGATTGAGGAGTTGGTTCATTATGGGTCAATTGAGTTATGCTCTGTTTTACCATCTCACGCTACCTAA 570 46.32 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEVARLMCGPRARTNFPYNPNELKTSSSKLLSATLTAKLHKCYIASLQMTEKSSLQEVEEPLLLPPSGSADNGFYKPGMKLPETRTANEDARELEGKWMVKKVHNEITHLKALEEDHIEQMIEELVHYGSIELCSVLPSHAT 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1511034 1511858 - Conep20aG0035100.1 Cone20ag0337 460241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0337 189 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0337 189 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0337 189 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0337 189 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0337 189 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0337 189 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Cone20ag0337 189 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 106 IPR050913 -
Cone20ag0337 189 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Cone20ag0337 189 CDD AP2 6 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0337 189 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0337 Cone-Chr20:1511034 Cone7ag0635 Cone-Chr7:3242891 6.07E-31 dispersed
Cone17ag0995 Cone-Chr17:7664321 Cone20ag0337 Cone-Chr20:1511034 7.54E-117 wgd
Cone20ag0337 Cone-Chr20:1511034 Cone4ag1757 Cone-Chr4:12906148 7.04E-66 wgd
Cone20ag0337 Cone-Chr20:1511034 Cone7ag1675 Cone-Chr7:11230679 2.47E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45579 PF00400 WD40 0.0013 CL0186 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0337 - - - 0.0