Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0339 ATGGCTTACCATAACCACCACTTGTCTCAAGACTTCCCTCTCTACCACTTCGCCGACCACCACCAACCGCCAATCTCCGGGGAGAATTCCCAGCCCAAGTCTGACCCGGCACAGAACCATTACCTGCAACGGACCGCGCCGAATTGGCTCAACAACGCCGGCTTACACGACACGAATTTCCTCAACCTCCAAACCAGTACACCTGTCACCGATTCTAACCGATTCCTCTCTTCCCGCGCCGCTCCTGTCCTCATGGACGACGACGTGTCTGCCACGATGTCGCCGGAATCCCCTGCTGACTTGAAGAGCGACGACGGTACTGCGGCGGCGGCAGAGACCTTTGTTGCTGTTAATGGGCGGCGCAAGGCGGAGATTCTAGCTCACCCGCTTTACGAGCAGCTTCTGTCTTCCCACGTGGCCTGTCTTAGAATCGCCACTCCGGTCGACCAGTTGCCGAGGATCGAAGCCCAGCTGGCTCAGTCTCCTACCGTGCTCGCCAAGTACTCTGCCTATAACGGCCATCCGCCATTAATGGCCGGCGATGACAAAGAGCTTGATCACTTTATGGCGCATTATGTTCTACTTCTCTGTTCGTTTAAAGAGCAGCTCCAGCAACATGTCCGGGTCCACGCCATGGAAGCCGTCTACGCTTGCTGGGAGATCGAACAATCCCTTCAAACATTAACTGGAGTATCCCCTGGTGAAGGCACGGGTGCTACCATGTCCGATCTTGAGGATGATGACTTGGACGGTGGGGGCCACTTGCTGTTTGATGGGAGCTCGGAGGGTCCCGACTCAATGGGATCGTTTGGTCCTCTTATCCCGACGGAGAGCGAGAGATGCTTGATGGAGAGAGTCAGGCAAGAGCTAAAGCTTGAACTAAAGAATGGGTATAAAGAGAAGATTGTTGATATAAGGGAGGAGATATTGCGAAAGAGACGAGCAGGAAAACTTCCCGGTGACACTACTTCAGTTCTAAAAGCATGGTGGCAATCACATTCTAAGTGGCCATACCCTACTGAGGAAGATAAGGTGAGGTTGGTTCAAGAAACTGGCCTGCAATTGAAGCAGATTAACAATTGGTTCATTAACCAAAGGAAAAGGAACTGGAATACTACTACTCCTTCATCTTCTACTACCACTGCCGTGAAGAGCAAACGAAAAAGGTGA 1170 52.31 MAYHNHHLSQDFPLYHFADHHQPPISGENSQPKSDPAQNHYLQRTAPNWLNNAGLHDTNFLNLQTSTPVTDSNRFLSSRAAPVLMDDDVSATMSPESPADLKSDDGTAAAAETFVAVNGRRKAEILAHPLYEQLLSSHVACLRIATPVDQLPRIEAQLAQSPTVLAKYSAYNGHPPLMAGDDKELDHFMAHYVLLLCSFKEQLQQHVRVHAMEAVYACWEIEQSLQTLTGVSPGEGTGATMSDLEDDDLDGGGHLLFDGSSEGPDSMGSFGPLIPTESERCLMERVRQELKLELKNGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKVRLVQETGLQLKQINNWFINQRKRNWNTTTPSSSTTTAVKSKRKR 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1520759 1522874 + Conep20aG0035300.1 Cone20ag0339 460243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0339 389 SMART KNOX2_2 175 230 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone20ag0339 389 Gene3D - 308 385 - -
Cone20ag0339 389 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 109 371 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone20ag0339 389 Pfam KNOX2 domain 180 229 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone20ag0339 389 FunFam homeobox protein knotted-1-like 3 isoform X1 310 371 - -
Cone20ag0339 389 MobiDBLite consensus disorder prediction 252 271 - -
Cone20ag0339 389 MobiDBLite consensus disorder prediction 24 39 - -
Cone20ag0339 389 Pfam ELK domain 289 310 IPR005539 GO:0003677(InterPro)
Cone20ag0339 389 SMART HOX_1 311 376 IPR001356 GO:0003677(InterPro)
Cone20ag0339 389 MobiDBLite consensus disorder prediction 369 389 - -
Cone20ag0339 389 CDD homeodomain 312 371 IPR001356 GO:0003677(InterPro)
Cone20ag0339 389 ProSiteProfiles 'Homeobox' domain profile. 309 372 IPR001356 GO:0003677(InterPro)
Cone20ag0339 389 Pfam Homeobox KN domain 329 368 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone20ag0339 389 SUPERFAMILY Homeodomain-like 311 375 IPR009057 -
Cone20ag0339 389 ProSiteProfiles ELK domain profile. 289 309 IPR005539 GO:0003677(InterPro)
Cone20ag0339 389 MobiDBLite consensus disorder prediction 17 39 - -
Cone20ag0339 389 Pfam KNOX1 domain 122 161 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone20ag0339 389 SMART KNOX1_2 119 163 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0339 Cone-Chr20:1520759 Cone9ag0742 Cone-Chr9:3527506 1.74E-117 dispersed
Cone17ag0998 Cone-Chr17:7678344 Cone20ag0339 Cone-Chr20:1520759 1.70E-259 wgd
Cone20ag0339 Cone-Chr20:1520759 Cone4ag1764 Cone-Chr4:12938180 1.05E-144 wgd
Cone20ag0339 Cone-Chr20:1520759 Cone7ag1682 Cone-Chr7:11259269 8.28E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45580 PF00412 LIM 3.00E-11 CL0167 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0339 - - - 0.0