Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0354 ATGATGCAGAGACGTAGTCCTCCCAAGCACGGACACGATGGGACTTCGCCGCTGCCTCTCGGGATGGATTGGAGCCCAGCTCCACGCAAATTTAATGGAAGGGATGCTGTCTGGCAGCATGATCCCCGGGCAGGATGGAGTTACTGTGTCTTGATACCTTCCTGGGTAGCACTTCCAAAATCAAGAGATTCAGATCCCGTAGTGTTTTACAGGGTTGAGGTTGTTATTCAATCACCTGAAGGAACAAGGACAACACGACGAATATTAAGAAGATTTAATGATTTCTTGAAGTTGTTTGCTAATACCAAAAAGCAATTTCCTAAGAAAACTATTCCACCAGCTCCACCTAAGGGATTCTTGCGGATGAAAACTCGGGCGTTGTTGGAAGAGAGAAAATGTGCTTTGGAGGAGTGGATGACAAAGCTACTTTCTGACATTGATATATCAAGAAGTGTTGCAGTGGCATCTTTTCTCGAGGTAGAGGCTGCTGCTAGATCTGCATTCCGAGATGAAAGTCAGCACGCATCAGAAACAAATTCTGCTTCCAATAGTGAAGTTACTTCACTTCAGCCACCTCTTCATTCAGGCTTATCCGTTATTGCTGGTAGCCCATCAATCACATCTGATTATGGCAGTGATACTGCCTACGAGGCTTCTGAGCTTGGAACACCAAGTGTAGGAACAGATGACAATTTTGATATTGCTGTGGAGGATTTAGCATTGGATGAAGATCTCACAGATCCCATAGAAAAGCTTGTTAAATATGGAATGTCTAATATTGATGAGGGACTATTTATGGGCGAGACCATTCTAGGACAGTTGGAAGGCATTCCAAGGAATAAATTGCATGACAGATATATTAACAATATTCTGAATGATGCGTGTAATGGAAATGCATCTAAGGCTTCATTTCTATCCCACAATGGATTGGAACTTTTCTCGGAGCCAGAGAATGGTAAGACTGTTCATGCTCAAGAGCTCTCCAATGAGAGTGTAGATAGCAATTCTAGCTCTTTGAGAGGTAGTGAAAAGTTGATCTCTTGGATTCCAAATCCATCTGGCGAAGGCTCTTTTGACCTACATGGAAGCGGGGGGGTTACAAATTCCACAGACATTCTTGGTAGCTCTGAGTTGCTGCTTTCAGGCGATACACAGATAGTTCTTCCATTGGATCAATGCCATAAAATGAACAGGTCTCTTTCCACTATGCAACAAAGAATAGTAACAGCAAGAACTGACATGGAGGATCTTATAGCAAGATTAAATCAAGAAATAGCTGTGAAAGATTACCTTTTAACAAAGGTCAATGATTTGGAAGTTGAACTTGAGAATACTAAGCAGAAAAGTAAAGAAAACATTCAGCAAGCTATTTTGTTTGAAAGGGAAAAGGTTACTCAAATGCAATGGGATATGGAGGAACTTCGTCGGAAATCAATGGAAATGGAGTTGAAGTTGAAGCCTCAAGAGGTTGAAAAGGCGAGGGAAGAGTCTACTACTCTTCACGATAAAGATGCTCTGCAGCAGGAGCTGGATACCGCTAAAGGACAGCTTGACAATTTGCGGAAGCAATATGAAGGGCAAGAAGCAAAATCCAAAGCAGATATCAAAGTGCTTGTAAAAGAGGTTAAATCTCTTCGAAGTTCTCTTGCAGATCTGAAGCGGGAAGTTAGTCAAACCCTAAAGGAAAAGTCTGAGGCTGAGAATTCGCTTGAGCAGGAAAAAGAAATGAGACAGCAAGCAAATAATGCCAGGAAAAATCTGCTGCATGAATGCAGAAATCTTCATCGCCAGCTCCAGGAACACACCATCAATTTAACCTCAGAAGATGGTAATAATTTCATTCTCGACCCATCATCATCCCTGGAAGATGCCGTACATTTGCTGACAAAATTTGATGATCAAATAAACCTCCTTCTTGAAGAGGCACAATCCTTGTCAAAAGATGGCCAAACTGATTCTTCTCAGGATGATCCAAGGGAAATTGATGCCGAGTTGAGGAAGATACTGTTAGATATCTTCTCAGACAATGCTAGATTGATGAAACAGGTATGCTCCGTTTTTCTCCAAGCTACCAAAATGAACATAGAATCTAAGAAAGTATACTGA 2106 41.74 MMQRRSPPKHGHDGTSPLPLGMDWSPAPRKFNGRDAVWQHDPRAGWSYCVLIPSWVALPKSRDSDPVVFYRVEVVIQSPEGTRTTRRILRRFNDFLKLFANTKKQFPKKTIPPAPPKGFLRMKTRALLEERKCALEEWMTKLLSDIDISRSVAVASFLEVEAAARSAFRDESQHASETNSASNSEVTSLQPPLHSGLSVIAGSPSITSDYGSDTAYEASELGTPSVGTDDNFDIAVEDLALDEDLTDPIEKLVKYGMSNIDEGLFMGETILGQLEGIPRNKLHDRYINNILNDACNGNASKASFLSHNGLELFSEPENGKTVHAQELSNESVDSNSSSLRGSEKLISWIPNPSGEGSFDLHGSGGVTNSTDILGSSELLLSGDTQIVLPLDQCHKMNRSLSTMQQRIVTARTDMEDLIARLNQEIAVKDYLLTKVNDLEVELENTKQKSKENIQQAILFEREKVTQMQWDMEELRRKSMEMELKLKPQEVEKAREESTTLHDKDALQQELDTAKGQLDNLRKQYEGQEAKSKADIKVLVKEVKSLRSSLADLKREVSQTLKEKSEAENSLEQEKEMRQQANNARKNLLHECRNLHRQLQEHTINLTSEDGNNFILDPSSSLEDAVHLLTKFDDQINLLLEEAQSLSKDGQTDSSQDDPREIDAELRKILLDIFSDNARLMKQVCSVFLQATKMNIESKKVY 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1576088 1581774 + Conep20aG0036800.1 Cone20ag0354 460258

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0354 701 Coils Coil 464 484 - -
Cone20ag0354 701 Gene3D - 54 186 IPR036871 GO:0035091(InterPro)
Cone20ag0354 701 MobiDBLite consensus disorder prediction 169 193 - -
Cone20ag0354 701 Coils Coil 628 648 - -
Cone20ag0354 701 FunFam Phox (PX) domain-containing protein 47 183 - -
Cone20ag0354 701 Coils Coil 503 530 - -
Cone20ag0354 701 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 1 699 IPR044588 GO:0015031(InterPro)
Cone20ag0354 701 Coils Coil 535 604 - -
Cone20ag0354 701 ProSiteProfiles PX domain profile. 48 165 IPR001683 GO:0035091(InterPro)
Cone20ag0354 701 Pfam PX domain 82 160 IPR001683 GO:0035091(InterPro)
Cone20ag0354 701 Coils Coil 428 455 - -
Cone20ag0354 701 MobiDBLite consensus disorder prediction 553 580 - -
Cone20ag0354 701 SUPERFAMILY Myosin rod fragments 503 601 - -
Cone20ag0354 701 SUPERFAMILY PX domain 41 161 IPR036871 GO:0035091(InterPro)
Cone20ag0354 701 MobiDBLite consensus disorder prediction 173 193 - -
Cone20ag0354 701 MobiDBLite consensus disorder prediction 1 25 - -
Cone20ag0354 701 SMART PX_2 48 161 IPR001683 GO:0035091(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0354 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1014 Cone-Chr17:7742696 Cone20ag0354 Cone-Chr20:1576088 0 wgd
Cone20ag0354 Cone-Chr20:1576088 Cone20ag1176 Cone-Chr20:7921791 8.82E-183 wgd
Cone20ag0354 Cone-Chr20:1576088 Cone4ag1779 Cone-Chr4:12980858 1.21E-205 wgd
Cone20ag0354 Cone-Chr20:1576088 Cone7ag1693 Cone-Chr7:11301106 7.36E-259 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g498 . . . . . . . . . . Cma01g01508 . Car09g00394 . . . Cpe06g00330 . . . . . . . Cla05g01730 Cam05g1843 Cec05g1855 Cco05g1915 Clacu05g1831 Cmu05g1714 Cre05g1845 . Cone7ag1693 Cone17ag1014 Cone20ag0354 Lsi04g02120 Csa03g04325 Chy04g00375 . Blo17g00016 . . Bda13g01255 Bpe14g00585 . . Bma02g00020 Sed05g1708 Cmo01g01563 Cmo09g00456 Cma09g00449 . . . . Cpe02g00446 Bhi09g02227 Tan01g3629 Cmetu04g2606 . Hepe01g2012 Mch11g0548 . . . . . . . . . . . Cme04g00418
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006027 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 39