Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0356 ATGGAAAAAGCTCTCCTTTGCTTCTTTGTCTTATCATCCCTAGCCATGACAAAGAGGACGATTTTAGTCATGTCTCTCTCTCCTGATGGGCAAGCTCTTCTCTCTCTCCTCCCTTCAGAACTATCCATGGTTTCCTCTTCCTCTGTTCTCTCCTCATGGAACCGTTCAAGCTCAACTCCATGTTCATGGCAGGGGATAACTTGCTCACCACAAGAAAGAGTCATCTCTCTCTCTCTCCCCAACACATTCCTAAACCTCTCCTCCATTCCTCCACAAATATCTTCCCTCACTTATCTCCAACTCCTCAACCTCTCCTCCACCAACATTTCCGGCCCAATCCCGCCTTCATTCGGCCATCTGGCCCATCTCAGCCTCCTCGACCTCTCCTCCAACTCCCTCTCCGGCCCAGTCCCGCCTGAGCTCGGCTCACTCTCTTCCCTCCAATTCCTTTTCTTAGATTTCAACTCACTCTCTGGCCCTATCCCTTACCAACTTTCCAATCTCACTTCACTGCAAGTTTTGTGCCTTCAAGACAATTTGCTTAATGGGTCAATCCCATCTCTGTTGGGTTCTTTAATTTCCCTCCGAGAATTAAGAATTGGAGGGAATTTATACTTAGCCGGAAAGATTCCTTCTGAAATTGGACTATTAACCAATCTTACGACATTTGGAGCTGCTTCCACTGGCCTTTCAGGCTCTATACCATCTTCATTTGGGAATTTGATCAGCTTGCAATATCTAGCACTTTATGACACAGAAGTTTCCGGAACAATTCCCTCTGAGCTTGGATTTTGTTCCGAGCTTAGAGACCTTTACTTGCATATCAACAAGCTCACTGGCTCAATCCCTCCTCAATTGGGTAAATTGCAAAAGCTTACTGGCTTGTATTTATGGGACAATGAACTAACAGGGCCAATCCCATCTGAGCTTTCCAACTGTTCTTCACTCGTTGTCCTTGATGTCTCGACAAATAATCTTTCGGGTGGAATTCCAAGTGAATTGGGGAAGCTTAGTCTTCTTGAATTACTCCATTTATCGGAAAATTCACTTACAGGTATTGTACCATGGCAGTTGAGCAATTGTACAAGCCTTAGTTCTTTCCAGCTTGATAATAATCAATTATCAGGTCCTATTCCTTTTCAACTTGGTAATTTGAAATCCTTGCAAACTCTTTTCTTGTGGGGCAATTTGTTATCCGGAGTGATTCCATCCTCTTTAGGCAACTTGACTGAACTCTCTTCCCTTGATCTTTCCACGAACAAGCTCACTGGCTCAATCCCGGAAGAGATTTACGGCTTGAAGAGGCTGAGCAAGCTTCTGCTTCTTGGAAATTCCTTATCAGGTGGGTTGTCTTCAAAAATAGCAGAATGTGAGTCTCTAGTGAGGTTAAGGCTTGCAGAAAACGAGCTTTCTGGTCAAATCCCCAAAGAAATAGGCCGATTGAAGAATCTTGTCTTTCTTGACTTTTACATGAACCATTTTTTGGGTAACATTCCGTCTGAGATAGCAAACATTACAGTTCTTGAGCTGTTGGATTTGCACAATAATCATTTGACGGGGGAAATTCCATCTGAATTAGGGCAGCTTGTGAATTTAGAGCAGATTGATCTTAGCCGAAACAGCTTAACGGGTGAGATTCCTTGGAGCGTAGGAAACTTGAGTTACTTGAACAAACTCGTTCTAAACAACAATCTCTTGACTGGGTCAATCCCAAAGTCCATTAAGGGCTTGCAAAAGCTAACTCTACTTGATTTGTCTTCAAACAGTCTTTCTGGTGAAATCCCACCTGAGATAGGTTATGTCAAGAGCTTGATAATGGGTTTAGACTTGAGCTCAAATGAATTCACCGGAGAAATACCTAATACCCTGTCTGGCTTGACTCAGTTACAGTCGCTTGATCTTTCCCGCAATATGCTTTACGGTAAAATCAAAGTCTTGGGTATTCTAATTAGTTTGACTTCCCTAAATATTTCCTACAACAATTTCTCTGGCCCTATACCTATTACTCCATTTTTCCGAACCTTGTCGTCAAATTCTTACCTTCAAAATCCAAGTCTTTGTGAATCATTAGATGGGGTTACTTGTTCTTCAAGCCTAATGCGACGAAACAGGATAATGAAGTCTGCGAGAACTGCCGGTGTGGTAATTATGATTCTGGTTTCAATTACCATTTTAGCCCTAGCTTTATGGGGTTTCTTGTCACGCAAGAAATCTTCTGGAACACCCTTCTCTTCATCATGTGCCGAAGATTTCTCTTATCCCTGGACTTTCATTCCATTCCAGAAGCTCAATTTCACAATGGATGATATCTTGGAATGCTTGAAAGATGAAAATGTGATAGGCAAAGGCTTTTCTGGAGTAGTCTACAAGGCTGAAATGCCCTCAGGTGAATTGATTGCTGTGAAAAAGCTCTGGAAAACAAAGCCAGAAGAAGAACCCATCGACTCTTTTGCTGCGGAGATTCAAATTCTAGGGCATATTAGGCACAGGAACATAGTGAAGCTCTTGGGCTATTGTTTCAATAAAAGTGTGAAGCTTCTTCTCTACAACTACATTCCAAATGGTAATCTTCAACAATTACTGCAAGACAATAGGAGCTTGGATTGGGAAACTAGATACAAAATCGCAGTTGGCTCAGCCCAGGGCCTGGCTTATCTTCATCATTATTGTGTTCCAGCCATTCTTCATCGAGATGTCAAGTGCAATAACATACTCTTAGACTCCAAGTTTGAGGCTTATCTTGCAGATTTTGGCCTTGCTAAGTTGATCATGAGCGCCCCAGATTATCGCAATGCAATGTCAAGAGTTGCCGGTTCTTATGGTTATATTGCTCCAGAGTACGGGTACACCATGAATATAACGGAGAAGAGTGATGTATACAGTTTCGGGGTGGTTTTGTTGGAGATACTAAGCGGTAGAAGTGCTGTAGAAAACCGGATTGGAGACGGGGTCCACATAGTAGAGTGGGTGAAGAAAAAGATGGGAAGCTTTGAACCAGCCATAACAATACTAGACTCTAAGCTTCAAGGTTTACCGGATCAAATGGTGCAAGAGATGCTTCAAACGCTAGGGATTGCAATGTTTTGCGTGAATTCATCGCCTGCAGAAAGGCCGACGATGAAGGAAGTGGTAGCATTGCTTATGGAGGTGAAGAACCCGCCCGAGGAATTAGGGAAGCAGACTTCTTCTCAGCCTCTAATAAAGCACTCCTCAATTCAAAGTTAA 3225 42.85 MEKALLCFFVLSSLAMTKRTILVMSLSPDGQALLSLLPSELSMVSSSSVLSSWNRSSSTPCSWQGITCSPQERVISLSLPNTFLNLSSIPPQISSLTYLQLLNLSSTNISGPIPPSFGHLAHLSLLDLSSNSLSGPVPPELGSLSSLQFLFLDFNSLSGPIPYQLSNLTSLQVLCLQDNLLNGSIPSLLGSLISLRELRIGGNLYLAGKIPSEIGLLTNLTTFGAASTGLSGSIPSSFGNLISLQYLALYDTEVSGTIPSELGFCSELRDLYLHINKLTGSIPPQLGKLQKLTGLYLWDNELTGPIPSELSNCSSLVVLDVSTNNLSGGIPSELGKLSLLELLHLSENSLTGIVPWQLSNCTSLSSFQLDNNQLSGPIPFQLGNLKSLQTLFLWGNLLSGVIPSSLGNLTELSSLDLSTNKLTGSIPEEIYGLKRLSKLLLLGNSLSGGLSSKIAECESLVRLRLAENELSGQIPKEIGRLKNLVFLDFYMNHFLGNIPSEIANITVLELLDLHNNHLTGEIPSELGQLVNLEQIDLSRNSLTGEIPWSVGNLSYLNKLVLNNNLLTGSIPKSIKGLQKLTLLDLSSNSLSGEIPPEIGYVKSLIMGLDLSSNEFTGEIPNTLSGLTQLQSLDLSRNMLYGKIKVLGILISLTSLNISYNNFSGPIPITPFFRTLSSNSYLQNPSLCESLDGVTCSSSLMRRNRIMKSARTAGVVIMILVSITILALALWGFLSRKKSSGTPFSSSCAEDFSYPWTFIPFQKLNFTMDDILECLKDENVIGKGFSGVVYKAEMPSGELIAVKKLWKTKPEEEPIDSFAAEIQILGHIRHRNIVKLLGYCFNKSVKLLLYNYIPNGNLQQLLQDNRSLDWETRYKIAVGSAQGLAYLHHYCVPAILHRDVKCNNILLDSKFEAYLADFGLAKLIMSAPDYRNAMSRVAGSYGYIAPEYGYTMNITEKSDVYSFGVVLLEILSGRSAVENRIGDGVHIVEWVKKKMGSFEPAITILDSKLQGLPDQMVQEMLQTLGIAMFCVNSSPAERPTMKEVVALLMEVKNPPEELGKQTSSQPLIKHSSIQS 1074
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1593832 1597169 - Conep20aG0037000.1 Cone20ag0356 460260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0356 1074 PRINTS Leucine-rich repeat signature 412 425 - -
Cone20ag0356 1074 PRINTS Leucine-rich repeat signature 626 639 - -
Cone20ag0356 1074 SUPERFAMILY Protein kinase-like (PK-like) 759 1049 IPR011009 -
Cone20ag0356 1074 ProSiteProfiles Protein kinase domain profile. 774 1067 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0356 1074 Pfam Leucine rich repeat N-terminal domain 27 69 IPR013210 -
Cone20ag0356 1074 FunFam Putative LRR receptor-like serine/threonine-protein kinase 759 851 - -
Cone20ag0356 1074 SUPERFAMILY L domain-like 378 698 - -
Cone20ag0356 1074 Gene3D Ribonuclease Inhibitor 379 448 IPR032675 -
Cone20ag0356 1074 SUPERFAMILY RNI-like 77 447 - -
Cone20ag0356 1074 Gene3D Phosphorylase Kinase; domain 1 748 851 - -
Cone20ag0356 1074 Pfam Leucine Rich Repeat 340 361 IPR001611 GO:0005515(InterPro)
Cone20ag0356 1074 Pfam Leucine Rich Repeat 651 667 IPR001611 GO:0005515(InterPro)
Cone20ag0356 1074 Pfam Leucine Rich Repeat 579 599 IPR001611 GO:0005515(InterPro)
Cone20ag0356 1074 Pfam Leucine Rich Repeat 315 337 IPR001611 GO:0005515(InterPro)
Cone20ag0356 1074 Pfam Leucine Rich Repeat 291 313 IPR001611 GO:0005515(InterPro)
Cone20ag0356 1074 Pfam Leucine Rich Repeat 531 553 IPR001611 GO:0005515(InterPro)
Cone20ag0356 1074 Pfam Leucine Rich Repeat 508 529 IPR001611 GO:0005515(InterPro)
Cone20ag0356 1074 Pfam Leucine Rich Repeat 608 626 IPR001611 GO:0005515(InterPro)
Cone20ag0356 1074 ProSitePatterns Serine/Threonine protein kinases active-site signature. 894 906 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0356 1074 SMART LRR_typ_2 168 192 IPR003591 -
Cone20ag0356 1074 SMART LRR_typ_2 385 408 IPR003591 -
Cone20ag0356 1074 SMART LRR_typ_2 289 313 IPR003591 -
Cone20ag0356 1074 SMART LRR_typ_2 505 529 IPR003591 -
Cone20ag0356 1074 SMART LRR_typ_2 120 144 IPR003591 -
Cone20ag0356 1074 SMART LRR_typ_2 577 601 IPR003591 -
Cone20ag0356 1074 SMART LRR_typ_2 409 433 IPR003591 -
Cone20ag0356 1074 SMART LRR_typ_2 337 360 IPR003591 -
Cone20ag0356 1074 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515(InterPro)
Cone20ag0356 1074 Pfam Leucine rich repeat 387 446 IPR001611 GO:0005515(InterPro)
Cone20ag0356 1074 Gene3D Ribonuclease Inhibitor 449 696 IPR032675 -
Cone20ag0356 1074 SMART serkin_6 774 1051 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0356 1074 Gene3D Transferase(Phosphotransferase) domain 1 852 1067 - -
Cone20ag0356 1074 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 432 1052 IPR051564 GO:0016020(PANTHER)
Cone20ag0356 1074 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 852 1065 - -
Cone20ag0356 1074 MobiDBLite consensus disorder prediction 1054 1074 - -
Cone20ag0356 1074 Pfam Protein kinase domain 776 1044 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0356 1074 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 204 425 - -
Cone20ag0356 1074 ProSitePatterns Protein kinases ATP-binding region signature. 780 803 IPR017441 GO:0005524(InterPro)
Cone20ag0356 1074 MobiDBLite consensus disorder prediction 1056 1074 - -
Cone20ag0356 1074 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 26 188 - -
Cone20ag0356 1074 Gene3D Ribonuclease Inhibitor 28 184 IPR032675 -
Cone20ag0356 1074 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 426 699 - -
Cone20ag0356 1074 Gene3D Ribonuclease Inhibitor 281 378 IPR032675 -
Cone20ag0356 1074 Gene3D Ribonuclease Inhibitor 185 280 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0356 Cone-Chr20:1593832 Cone4ag1513 Cone-Chr4:11756834 2.79E-105 dispersed
Cone2ag0559 Cone-Chr2:3175328 Cone20ag0356 Cone-Chr20:1593832 2.30E-25 dispersed
Cone4ag1465 Cone-Chr4:11560328 Cone20ag0356 Cone-Chr20:1593832 3.77E-30 dispersed
Cone17ag0766 Cone-Chr17:5805973 Cone20ag0356 Cone-Chr20:1593832 1.05E-176 wgd
Cone20ag0356 Cone-Chr20:1593832 Cone4ag1464 Cone-Chr4:11559360 3.47E-127 wgd
Cone20ag0356 Cone-Chr20:1593832 Cone7ag1472 Cone-Chr7:10357304 2.47E-202 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82537 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0356 - - - 0.0