Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0358 ATGAAGAACAACAACAAGCCCCAAACACAGCTCTTCTGGCCCAGAGTGGTCATGCGCAAGTGGCTCAACATCAGCGCGAAGGATTCTGATTACAGTGCTGATACCGAGGATGAAGATGATCCCAAATCCGATTCTGACAATGAAGAATACGATGATCAGATGCGAAGGGAATCTCGGTTTAAGGTTCGCAGAGGAGCAGAAATTCAGGTGGATGCTGATGATGTCTTTCCAAGGATAAGAAGGCGGAAATCAGAAACTTTTAGAACACAGTATATTAACAAAAAAGAAATCAGAATATGTGCTGGGACATGGAATGTTGGAGGGAAACTACCACCTGATGACCTGGATATTGATGATTGGCTAGATACAAATGAGCCAGCTGATATCTATGTGCTGGGTCTTCAGGAGATTGTACCATTGAATGCTGGTAATGTACTTGGTGCTGAAGATAGCCGCCCAGTCCCAAAATGGGAAAACATTATCCGAGAGGCACTAAATAGAGTAAGACCTGTTGCAACCAAGGTTAGATGCTTTAGCGATCCCCCCTCACCGTCAAAGTTTAAGCCATCTGATGACATATTAGATTTTGAAGAAGACATTTTGCATGAAAGTGATGGTGATATTGGCGAGGAAGTACATCCATTTGACAAAGGATTCATTGGATTAGAAGAAGCAAAACCGGTCATGGTAAAAAATATGCTTTTGGACTCTATTGTCGAACATGACCTACAAGGACAATTTTCCCCTCCTAAAAAAATTGACAGGCTAAATTGTTTTCGGACTGAAGATGGAACCGAAAATGATGAAGCATCAGTCGCTCAACAGAATCGCATGTTGACCAAAATGCTTAGCGGGTCAGAAAGGCTTGGTTTGTGCTGGCCAGAGCCTCCATTACATTTGCTATCCCAACATGTACTAGAAAGACCTCATTCCTTCAGATCAATCAAATCTTTCAAAGCGACCAAATCCTTTGGAACTTATAGTTCTTTTAAATCAACAATAAATGAAGCGCTATCAGAGATAGCCTTACTTGCAGAAATCGACCTTGAATCCCTCATGAAGCAGAAAAGAAGACCACAATATGTAAGGATGGTAAGTAAACAGATGGTCGGAATTTTCATCACTATATGGGTTCGTAGGAGCTTGCGTAGGCATATACAGAATGTGAAGGTCTCTACTGTTGGGGTTGGTGTGATGGGCTATATTGGTAACAAGGGATCTATATCTGTCAGCATGTCCGTATATCAGACCCTTTTCTGTTTTGTATGTACTCACCTGACAGCAGGCGAAAAAGATGTAGATGGAAACAAAAGAAATGCTGATGTATATGAAATTCATCGCAGAACTCAATTCTGTTCACATCCTGGTATTGGGCTTCCCAAACATATATATGACCATGAGCGGATAATATGGCTGGGCGATTTAAATTACCGCATTAACCTGTCATACGAGAAAACACGAGAACTTATCTCCAAAAAGGAGTGGTCCGCATTGCTTGAAAAGGACCAGCTTGTAAGAGAATTTAAAAAGGGTCGTGCATTTGATGGATGGTCTGAGGCTATTTTAAATTTTGCACCTACATATAAGTATGAGAATAATTCGCAAAAGTACTATGGAGATGATCATAAAGTTGGGAGGCGTACTCCATCCTGGTGTGACCGCATACTTTCTTATGGCAATGGAATGAGGCAATTGACTTATAGGAGAACTGAGAATCAATTCTCTGATCATCGACCTGTGACAGCCACATATATAGCTGAAGTCGAGGTGTTTAGTCCTCGAAGACTACAGCGAGCCCTTACTTTCACGGATGCAGAGATCGAAAAAGAAGCTGTGGAGGAACTGGATATTTAA 1854 41.53 MKNNNKPQTQLFWPRVVMRKWLNISAKDSDYSADTEDEDDPKSDSDNEEYDDQMRRESRFKVRRGAEIQVDADDVFPRIRRRKSETFRTQYINKKEIRICAGTWNVGGKLPPDDLDIDDWLDTNEPADIYVLGLQEIVPLNAGNVLGAEDSRPVPKWENIIREALNRVRPVATKVRCFSDPPSPSKFKPSDDILDFEEDILHESDGDIGEEVHPFDKGFIGLEEAKPVMVKNMLLDSIVEHDLQGQFSPPKKIDRLNCFRTEDGTENDEASVAQQNRMLTKMLSGSERLGLCWPEPPLHLLSQHVLERPHSFRSIKSFKATKSFGTYSSFKSTINEALSEIALLAEIDLESLMKQKRRPQYVRMVSKQMVGIFITIWVRRSLRRHIQNVKVSTVGVGVMGYIGNKGSISVSMSVYQTLFCFVCTHLTAGEKDVDGNKRNADVYEIHRRTQFCSHPGIGLPKHIYDHERIIWLGDLNYRINLSYEKTRELISKKEWSALLEKDQLVREFKKGRAFDGWSEAILNFAPTYKYENNSQKYYGDDHKVGRRTPSWCDRILSYGNGMRQLTYRRTENQFSDHRPVTATYIAEVEVFSPRRLQRALTFTDAEIEKEAVEELDI 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1607833 1613319 + Conep20aG0037200.1 Cone20ag0358 460262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0358 617 SUPERFAMILY DNase I-like 85 603 IPR036691 -
Cone20ag0358 617 Gene3D Endonuclease/exonuclease/phosphatase 306 616 IPR036691 -
Cone20ag0358 617 FunFam type IV inositol polyphosphate 5-phosphatase 3 313 614 - -
Cone20ag0358 617 SMART i5p_5 259 592 IPR000300 GO:0016791(InterPro)|GO:0046856(InterPro)
Cone20ag0358 617 MobiDBLite consensus disorder prediction 32 47 - -
Cone20ag0358 617 FunFam Type I inositol polyphosphate 5-phosphatase 1 78 181 - -
Cone20ag0358 617 Gene3D Endonuclease/exonuclease/phosphatase 76 180 IPR036691 -
Cone20ag0358 617 MobiDBLite consensus disorder prediction 28 58 - -
Cone20ag0358 617 Pfam Endonuclease/Exonuclease/phosphatase family 2 102 167 IPR000300 GO:0016791(InterPro)|GO:0046856(InterPro)
Cone20ag0358 617 Pfam Endonuclease/Exonuclease/phosphatase family 2 348 582 IPR000300 GO:0016791(InterPro)|GO:0046856(InterPro)
Cone20ag0358 617 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 16 611 IPR045849 GO:0004439(PANTHER)|GO:0004445(InterPro)|GO:0034485(PANTHER)|GO:0046856(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0358 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0358 Cone-Chr20:1607833 Cone8ag0619 Cone-Chr8:6091798 3.24E-144 dispersed
Cone17ag0768 Cone-Chr17:5819099 Cone20ag0358 Cone-Chr20:1607833 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1334 . . . . . . . . Cmo04g02580 Cmo15g00580 . . . . . . Cpe13g00701 Bhi04g01737 . . . . . . Cla08g00742 Cam08g1169 Cec08g0759 Cco08g0867 Clacu08g0876 . Cre08g0677 . . Cone17ag0768 Cone20ag0358 . . . . . . . Bda13g01416 . . Bma01g01429 . . . . . . Car04g02373 Car15g00534 Cpe01g02134 . . . . . . . . . . . . . . . Lsi08g00578 . Chy03g00484 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003115 1 10 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 52