Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0364 ATGAGCCAAAATATCCAAATTCTTCATCGTTTACAAGACATGAACTTCCTCCTCTTCATTTCCTTTCTGTTCTTTTCTCTCACTTCTCCCTCTTTTCTCCGACCTGCACTTGCTAGAGGCGGTGAAGACACGTTCATCACTCCAGGTTTCAAGAACATCACTTATGGGAGCTCTGCAAGACTGTTACTCGACGAGAAACAGTCGGAGGGAAGTGTTGATAAAGCTCAAGGGTACATGACTAATGCTGATCTTGAAGAGGCCATCAAGGCGTTTGGACAAAGATGTAGTAACATTGCTAGGATATATAGTATTGGTGAGAGTGTGCAAGGGATTCCCCTGTGGGTGATGGAAATCTCTGACAAGCCCGGAGAGGAAGAAGCTGAACCCGCGTTTAAGTACATTGGAAATGTGCATGGAGATGAACCTGTTGGCCGTGAACTTCTATTATTACTTGCGAACTGGATATGTGATAACTATTTGAAGGATCCGCTGGCTACCTTGGTTGTGGAAAATGTTCATCTTCATTTACTTCCATCTATGAATCCTGATGGGTTTTCTCTGAGGAGACGTGGTAATGCAAACAAGATTGACCTAAATAGAGACTTTCCAGATCAGTTCTTTCCCATTAACAATGATGAGGATGCACGACAACCTGAAACAAGAGCAATCATGAATTGGTTGAGAGATATACATTTCACAGCATCTGCCAGTTTGCATGGGGGAGCACTTGTTGCAAATTACCCATGGGATGGAACTGAAGATAAAAGGAGGAATTACTATGCATCTCCTGATGATGAGACATTCAGATTTATGGCAAGTGTATACAGTCGCTCTCACCATAACATGTCTCTAAGCAAGGAGTTTCAAGGTGGAATTACAAATGGAGCTCAATGGTATCCCATATATGGTGGCATGCAGGACTGGAACTATATACATGGTGGCTGTTTAGAATTGACTTTGGAAGTCAGTGATAACAAATGGCCTGCTGCTAATGAGGTGCCTGTTAGATCTCGATCAATTCCTTCTGTTGTTATTCAATGA 1041 42.46 MSQNIQILHRLQDMNFLLFISFLFFSLTSPSFLRPALARGGEDTFITPGFKNITYGSSARLLLDEKQSEGSVDKAQGYMTNADLEEAIKAFGQRCSNIARIYSIGESVQGIPLWVMEISDKPGEEEAEPAFKYIGNVHGDEPVGRELLLLLANWICDNYLKDPLATLVVENVHLHLLPSMNPDGFSLRRRGNANKIDLNRDFPDQFFPINNDEDARQPETRAIMNWLRDIHFTASASLHGGALVANYPWDGTEDKRRNYYASPDDETFRFMASVYSRSHHNMSLSKEFQGGITNGAQWYPIYGGMQDWNYIHGGCLELTLEVSDNKWPAANEVPVRSRSIPSVVIQ 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1637882 1643603 - Conep20aG0037800.1 Cone20ag0364 460268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0364 346 Gene3D Zn peptidases 76 340 - -
Cone20ag0364 346 PANTHER PROTEASE M14 CARBOXYPEPTIDASE 76 334 IPR050753 GO:0004181(PANTHER)|GO:0005615(PANTHER)|GO:0006518(PANTHER)|GO:0016485(PANTHER)
Cone20ag0364 346 FunFam Carboxypeptidase D 72 339 - -
Cone20ag0364 346 CDD M14_CP_plant 78 334 - -
Cone20ag0364 346 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 104 116 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cone20ag0364 346 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 129 143 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cone20ag0364 346 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 195 203 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cone20ag0364 346 PRINTS Carboxypeptidase A metalloprotease (M14) family signature 236 249 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cone20ag0364 346 Pfam Zinc carboxypeptidase 85 332 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cone20ag0364 346 SMART zn_carb 78 332 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cone20ag0364 346 SUPERFAMILY Zn-dependent exopeptidases 76 332 - -
Cone20ag0364 346 ProSitePatterns Zinc carboxypeptidases, zinc-binding region 1 signature. 129 151 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cone20ag0364 346 ProSitePatterns Zinc carboxypeptidases, zinc-binding region 2 signature. 239 249 IPR000834 GO:0004181(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0364 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1320 . . . . . . . . Cmo04g02579 . . . . . Sed11g1378 . . Bhi04g01745 Tan11g1099 . . Hepe02g2814 . Lcy10g1371 Cla08g00746 Cam08g1173 Cec08g0763 Cco08g0870 Clacu08g0879 . Cre08g0681 . . . Cone20ag0364 . . . Cme03g01053 Blo17g00133 . . Bda13g01417 . . . Bma02g00153 . . . . . Car04g02372 . Cpe01g02133 . . . . . . . . . . . . . . . Lsi08g00575 . Chy03g00488 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010573 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 32