Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0368 ATGTTCTCATTAAAGGTGGCGAACCAGAGAGGATTTGGTGACCAGTTCATTAGGTTTCCTGCCGGACAAGGCGGTGCCGATGAGGAAATAATTAGACATGGTCAGGAAGAAGAAGATCAAGGCAACCCTTCTTCTGCCTTTTCTCAATCCCCTGTTTCGGGTTTGAATCAACCTGGTGGGGAGATGTCTGCCATGGTGTCTGCTCTTACTCGTGTTGTTTCTCACCAGAGAGGTGATTACGGAAGTGGCGGCGGAGCACAGGGTTTTCCAGCGGCTGTTGGCTCCGCTTCCGGATTTTCTTGGGTTGGGCAGAAAAGAGGACGAGATCAAGATCATCATCATGGAACAAGTACAATTCAATCAGTTCAAAGTAGTATTACTTCATTTCCAATGATTAACTATGGAGGCTACGTTGATTTCGGACATTTATCATCATCTTCGTCATCCATTAATCATCCCGGAGCGGAAGAAGGATCAAATATAGCAGCAGCAACACCTACAAGCACTACTGACATGGCACAAGTGTCAAACGAAGAAACAGGGGATCAAAGAACAAGAAGAAGATACAGAGGAGTGAGAATGAGACCGTGGGGTAAATGGGCAGCGGAAATAAGAGACCCACAAAAAGCTGCCCGGGTCTGGCTGGGCACCTTCGACACGGCAGAGGACGCTGCCCGAGCCTACGATGCGGCTGCCCTAAGATTCAGAGGTAACAGAGCCAAGCTCAATTTCCCCGAAAATGTCACCGCCATGGTCCCACCACCTCCTCCACATCAGCCGCCACCTCTTCTTCATAATATTACGCCGTCTAGTGTTCCTTCTCATTTTCAACAACCACCTTATTTTAATCAGCCACCATTTTTACAGTCGCTTGCTTTTCATGGCCCTTCTTCTTTTCCTCCTCCTCCTTCCTCTGTTTCCGATAGTCAGCTTCGTGATTACTTGGATTATTCTCAGTTGCTTCAAAGCTCTGGAGATTTTCATGGACAACCCTCGAATTCGCTCGAACAGATGTTTTATAATACACAGTTAGCTTCTCTTCAATCATCATCCTTATCTTCTTCTTCTTCTTCCTCTGTTTCAGTTCCTCTGTTCCTTTCTAGTCAGCACCAGGTAGGATATCTCCGATCACCAGAAAATCAAAATTCGGGCGATGGCTCTAGTGATTTTCCGGCCTCTTCCTGGTCAGGGTCCGGCCACTATCCACCCACCTCCGGTTAA 1221 47.34 MFSLKVANQRGFGDQFIRFPAGQGGADEEIIRHGQEEEDQGNPSSAFSQSPVSGLNQPGGEMSAMVSALTRVVSHQRGDYGSGGGAQGFPAAVGSASGFSWVGQKRGRDQDHHHGTSTIQSVQSSITSFPMINYGGYVDFGHLSSSSSSINHPGAEEGSNIAAATPTSTTDMAQVSNEETGDQRTRRRYRGVRMRPWGKWAAEIRDPQKAARVWLGTFDTAEDAARAYDAAALRFRGNRAKLNFPENVTAMVPPPPPHQPPPLLHNITPSSVPSHFQQPPYFNQPPFLQSLAFHGPSSFPPPPSSVSDSQLRDYLDYSQLLQSSGDFHGQPSNSLEQMFYNTQLASLQSSSLSSSSSSSVSVPLFLSSQHQVGYLRSPENQNSGDGSSDFPASSWSGSGHYPPTSG 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1675514 1677510 - Conep20aG0038200.1 Cone20ag0368 460272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0368 406 MobiDBLite consensus disorder prediction 35 61 - -
Cone20ag0368 406 Gene3D AP2/ERF domain 187 247 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0368 406 ProSiteProfiles AP2/ERF domain profile. 188 245 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0368 406 MobiDBLite consensus disorder prediction 101 121 - -
Cone20ag0368 406 MobiDBLite consensus disorder prediction 40 57 - -
Cone20ag0368 406 Pfam AP2 domain 188 237 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0368 406 SUPERFAMILY DNA-binding domain 188 246 IPR016177 GO:0003677(InterPro)
Cone20ag0368 406 PRINTS Ethylene responsive element binding protein signature 189 200 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0368 406 PRINTS Ethylene responsive element binding protein signature 211 227 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0368 406 PANTHER DNA-BINDING DOMAIN 151 349 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cone20ag0368 406 MobiDBLite consensus disorder prediction 373 406 - -
Cone20ag0368 406 CDD AP2 196 247 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0368 406 MobiDBLite consensus disorder prediction 146 179 - -
Cone20ag0368 406 SMART rav1_2 188 251 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0368 406 MobiDBLite consensus disorder prediction 146 186 - -
Cone20ag0368 406 FunFam Ethylene-responsive transcription factor 2 187 246 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0368 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0368 Cone-Chr20:1675514 Cone6ag1305 Cone-Chr6:10495939 1.39E-30 dispersed
Cone17ag0776 Cone-Chr17:5888279 Cone20ag0368 Cone-Chr20:1675514 1.38E-170 wgd
Cone20ag0368 Cone-Chr20:1675514 Cone4ag1792 Cone-Chr4:13040697 4.67E-17 wgd
Cone20ag0368 Cone-Chr20:1675514 Cone4ag1483 Cone-Chr4:11619194 5.22E-57 wgd
Cone20ag0368 Cone-Chr20:1675514 Cone7ag1701 Cone-Chr7:11339494 3.58E-17 wgd
Cone20ag0368 Cone-Chr20:1675514 Cone7ag1461 Cone-Chr7:10308973 1.10E-61 wgd
Cone20ag0368 Cone-Chr20:1675514 Cone9ag1257 Cone-Chr9:9260150 3.35E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1351 Blo01g01736 Blo12g00779 Bda01g00864 Bda03g00400 Bpe02g00207 Bpe04g00363 Bma04g00381 Bma01g02513 Cmo04g02571 Cmo15g00593 . . . . . . . Bhi04g02173 . . . . . . Cla08g00268 Cam08g0708 Cec08g0269 Cco08g0355 Clacu08g0418 . Cre08g0246 Cone4ag1483 Cone7ag1461 Cone17ag0776 Cone20ag0368 . . . Cme03g00299 Blo17g00139 Blo18g00150 Bda11g00867 Bda13g01423 Bpe02g01101 Bpe14g00434 . Bma02g00158 . . Cmo09g01245 . . Car04g02363 Car09g01066 . . . . . . . . . . . . . . . . Lsi08g00564 . Chy03g00496 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003344 4 0 4 4 4 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45583 PF05907 DUF866 1.80E-41 No_clan Cone TF