Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0373 ATGGCGGTTTCCGTTTCCGCATCGAGGTTTAGTTTGGTGCCAGAGCGTTCTAATCGCTTACTTGCGGCTTCTTCCAGTTCTTCGAATTTATCTTCCTTGTCTTCTCTACGTCTTCCGGCACAGCTCCACTGTTTACGATTCGGAAACAGTAGAATTTCGGCTCCTTCTCAACTTCGAATCCTTCCACTGGTGGAAGCAAAGAAGCAGACATTTTCCAACTTGGACGATTTGTTGGTTAATTCGGACAAACCCGTTCTTGTTGACTTCTATGCAACCTGGTGTGGTCCCTGTCAATTCATGGCACCTGTTCTGGATGAAGTTGGTACCAAGCTGAAAGATACAATCCAGGTGGTTAAGATCGACACTGAGAAGTATCCTAGCATTGCTGATAAATACAGAATAGAAGCTTTGCCTACTTTCATCATCTTTAAGGATGGGGAACCATATGACCGATTTGAGGGTGCTTTGACTGCAAATCAGCTTATCCAACGTATTGAAGAGAGTCTGAAGATCAAACAGTAG 522 44.25 MAVSVSASRFSLVPERSNRLLAASSSSSNLSSLSSLRLPAQLHCLRFGNSRISAPSQLRILPLVEAKKQTFSNLDDLLVNSDKPVLVDFYATWCGPCQFMAPVLDEVGTKLKDTIQVVKIDTEKYPSIADKYRIEALPTFIIFKDGEPYDRFEGALTANQLIQRIEESLKIKQ 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1720265 1723270 - Conep20aG0038700.1 Cone20ag0373 460277

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0373 173 Pfam Thioredoxin 69 166 IPR013766 -
Cone20ag0373 173 SUPERFAMILY Thioredoxin-like 70 170 IPR036249 -
Cone20ag0373 173 ProSitePatterns Thioredoxin family active site. 86 104 IPR017937 -
Cone20ag0373 173 PANTHER GEO12009P1 65 170 - GO:0005737(PANTHER)|GO:0015035(PANTHER)
Cone20ag0373 173 Gene3D Glutaredoxin 67 173 - -
Cone20ag0373 173 ProSiteProfiles Thioredoxin domain profile. 50 170 IPR013766 -
Cone20ag0373 173 FunFam Thioredoxin 62 169 - -
Cone20ag0373 173 PRINTS Thioredoxin family signature 85 93 - -
Cone20ag0373 173 PRINTS Thioredoxin family signature 133 144 - -
Cone20ag0373 173 PRINTS Thioredoxin family signature 93 102 - -
Cone20ag0373 173 CDD TRX_family 78 166 - -
Cone20ag0373 173 NCBIfam thioredoxin 71 168 IPR005746 GO:0015035(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0373 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0373 Cone-Chr20:1720265 Cone8ag1505 Cone-Chr8:11392596 6.03E-19 dispersed
Cone20ag0373 Cone-Chr20:1720265 Cone15ag1059 Cone-Chr15:8773164 1.37E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1363 . Blo12g00783 . Bda03g00395 . Bpe04g00357 Bma04g00373 . . . . Cma09g01174 . . . . . . . . . . . . . . . . . . . . . . Cone20ag0373 . . . . . . . . . . . . . . Cmo09g01181 . . . . . . . . . . . . . . . . . . . . . . Chy03g00253 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013186 1 1 1 1 1 0 2 0 0 1 1 0 2 1 1 2 0 1 1 0 0 1 1 1 1 1 1 1 2 1 27