Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0378 ATGTCATTCAGAAGCATAGTCCGTGATGTTAGGGATGGGTTTGGAAGCTTGTCGAGGCGTAGTTTTGAGTTAAGATTTCCAGGTCATGATGATCATCATCATAGGAGGAAATCACACGGATCGGTCCATGAGTTACTGGACCGGACCATTGTGATCCAGACTAGCAGGTGGGCCAGCTTGCCTCCGGAGTTATTACGAGACGTGGTCAAGAGATTGGAGGCGAGTGAGAGCACATGGCCTGCTCGGAAAAATGTTGTTGCTTGTTCGGCTGTTTGTCGCTCTTGGAGGGAAATGTGTAGAGAAATTGTTACGGGTCCGGAGTATTCCGGAAAGATTACCTTCCCTATCTCGCTCAAGCAGCCTGGTCCTCGAGATGGAACAATCCAATGCTTCATTAAGAGGGACAAATCTAATTTTACTTATCATCTTTTCCTTTGCCTTAGTCCCACTTTGCTTGTAGAGAATGGAAAATTTCTTCTTTCTGCAAAACGGACAAGGAGAACTACTTGCACAGAGTATGTGATCTCAATGGACGCTGATAATATATCAAGATCGAGTAGTACTTACATTGGAAAACTTAGGTCAAATTTTCTCGGGACGAAATTCATCATTTGCGATACACAACCACCTTACAAAAATGCTCAGCAGGTTTCTCAACCAGGTAGAAGCCGAAGATTCTACTCCAAAAAGGTCTCCCCAAAGGTGCCTACAGGCAGCTACACCATTGCTCAAGTCAGTTATGAGCTGAACGTTCTCGGCACAAGGGGCCCACGCCGGATGCACTGCACAATGCTCTCTATCCCAGCCTCTTCCCTTGACCCTGGTGGGTTTGTCCCAGGCCAGCCCAAGCTCCTCCCCTGTTCCCTTGAGGACTCCTTCCGCAGCAACATCTCCTCCTCCTCAAAGTCCATCGATTTCCCCAGCGCCCGGTTCTCTGACATTGGTTCCGGTTTGAACTATGAAGAAGAAGATCAAGATGATCAGAAGGAGATGCGACCCTTGATTCTTCGGAACAAGGCGCCTAGGTGGCACGAGCAGTTGCAGTGTTGGTGTTTGAATTTTAGGGGGAGAGTGACTGTGGCTTCTGTGAAGAACTTTCAGCTGATTGCTGGCACTCAGCTGCCTGTGGCTGCTGCTCCTACTGGAGCACCAGTGGGGGCAGTGGCAGTACAGCTGCAGCCACCAACGGCAACCCAACGGACACAACCGATGAGTCAGTCAGACCATGATAAGATTATCCTTCAGTTTGGAAAGATTGGAAAGGATATGTTTACTATGGATTATAGGTATCCCCTGTCGGCTTTTCAAGCCTTTGCTATCTGCCTTAGCAGCTTCGATACGAAATTGGCATGTGAATAA 1359 48.12 MSFRSIVRDVRDGFGSLSRRSFELRFPGHDDHHHRRKSHGSVHELLDRTIVIQTSRWASLPPELLRDVVKRLEASESTWPARKNVVACSAVCRSWREMCREIVTGPEYSGKITFPISLKQPGPRDGTIQCFIKRDKSNFTYHLFLCLSPTLLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIICDTQPPYKNAQQVSQPGRSRRFYSKKVSPKVPTGSYTIAQVSYELNVLGTRGPRRMHCTMLSIPASSLDPGGFVPGQPKLLPCSLEDSFRSNISSSSKSIDFPSARFSDIGSGLNYEEEDQDDQKEMRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAGTQLPVAAAPTGAPVGAVAVQLQPPTATQRTQPMSQSDHDKIILQFGKIGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1761994 1764823 - Conep20aG0039200.1 Cone20ag0378 460282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0378 452 PRINTS Tubby superfamily signature 336 353 IPR000007 -
Cone20ag0378 452 PRINTS Tubby superfamily signature 239 266 IPR000007 -
Cone20ag0378 452 PRINTS Tubby superfamily signature 173 189 IPR000007 -
Cone20ag0378 452 PRINTS Tubby superfamily signature 430 452 IPR000007 -
Cone20ag0378 452 PRINTS Tubby superfamily signature 189 213 IPR000007 -
Cone20ag0378 452 PRINTS Tubby superfamily signature 354 370 IPR000007 -
Cone20ag0378 452 PRINTS Tubby superfamily signature 409 428 IPR000007 -
Cone20ag0378 452 Pfam Tub family 118 447 IPR000007 -
Cone20ag0378 452 ProSitePatterns Tub family signature 2. 437 452 IPR018066 -
Cone20ag0378 452 CDD F-box_AtTLP-like 57 101 - -
Cone20ag0378 452 Gene3D - 52 102 - -
Cone20ag0378 452 FunFam Tubby-like F-box protein 52 105 - -
Cone20ag0378 452 Gene3D Tubby Protein; Chain A 117 446 IPR025659 -
Cone20ag0378 452 SUPERFAMILY Tubby C-terminal domain-like 106 452 IPR025659 -
Cone20ag0378 452 SUPERFAMILY F-box domain 52 100 IPR036047 GO:0005515(InterPro)
Cone20ag0378 452 Pfam F-box-like 57 100 IPR001810 GO:0005515(InterPro)
Cone20ag0378 452 ProSitePatterns Tub family signature 1. 354 367 IPR018066 -
Cone20ag0378 452 PANTHER TUBBY-RELATED 52 451 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0378 K19600 - - rcu:8283226 697.197
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0378 Cone-Chr20:1761994 Cone8ag0970 Cone-Chr8:9140265 1.45E-222 dispersed
Cone17ag0784 Cone-Chr17:6042285 Cone20ag0378 Cone-Chr20:1761994 5.62E-306 wgd
Cone20ag0378 Cone-Chr20:1761994 Cone4ag1499 Cone-Chr4:11673097 2.96E-213 wgd
Cone20ag0378 Cone-Chr20:1761994 Cone7ag1448 Cone-Chr7:10255177 5.11E-237 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g808 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1448 Cone17ag0784 Cone20ag0378 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone7ag1448 . 1 434 TUB Transcription Factor Family AT1G76900 69.5 4.1e-173 605.1
Cone8ag0970 . 1 434 TUB Transcription Factor Family AT1G76900 70.7 1.9e-170 596.3
Cone12ag0937 . 1 433 TUB Transcription Factor Family AT1G76900 70.2 5.5e-170 594.7
Cone17ag0784 . 1 454 TUB Transcription Factor Family AT1G76900 66.9 1.4e-165 580.1
Cone20ag0378 . 1 452 TUB Transcription Factor Family AT1G76900 67.5 1.2e-164 577.0
Cone4ag1499 . 1 407 TUB Transcription Factor Family AT1G76900 67.1 1.9e-154 543.1
Cone6ag1629 . 1 422 TUB Transcription Factor Family AT1G76900 52.0 2.4e-117 419.9
Cone9ag1554 . 1 417 TUB Transcription Factor Family AT1G76900 51.5 2.3e-115 413.3
Cone7ag0180 . 13 391 TUB Transcription Factor Family AT1G76900 50.7 2.0e-111 400.2
Cone12ag0937 . 177 433 TUB Transcription Factor Family AT1G25280 71.6 5.7e-98 354.8
Cone8ag0970 . 177 434 TUB Transcription Factor Family AT1G25280 71.7 1.8e-96 349.7
Cone7ag1448 . 173 434 TUB Transcription Factor Family AT1G25280 68.5 1.1e-93 340.5
Cone20ag0378 . 177 452 TUB Transcription Factor Family AT1G25280 62.2 6.1e-92 334.7
Cone17ag0784 . 177 454 TUB Transcription Factor Family AT1G25280 60.8 4.1e-88 322.0
Cone6ag1629 . 177 422 TUB Transcription Factor Family AT1G25280 58.6 4.1e-72 268.9
Cone9ag1554 . 176 417 TUB Transcription Factor Family AT1G25280 57.7 9.1e-72 267.7
Cone4ag1499 . 173 407 TUB Transcription Factor Family AT1G25280 60.6 4.5e-71 265.4
Cone4ag1918 . 182 422 TUB Transcription Factor Family AT1G25280 55.8 3.8e-70 262.3
Cone7ag0180 . 158 391 TUB Transcription Factor Family AT1G25280 55.4 8.5e-70 261.2
Cone20ag0910 . 178 417 TUB Transcription Factor Family AT1G25280 53.4 8.5e-70 261.2
Cone7ag1830 . 181 421 TUB Transcription Factor Family AT1G25280 54.7 2.5e-69 259.6
Cone4ag0175 . 155 392 TUB Transcription Factor Family AT1G25280 53.9 3.0e-67 252.7
Cone17ag0479 . 170 408 TUB Transcription Factor Family AT1G25280 51.9 5.2e-67 251.9
Cone14ag0786 . 166 402 TUB Transcription Factor Family AT1G25280 51.7 2.4e-64 243.0
Cone14ag0786 . 110 402 TUB Transcription Factor Family AT5G18680 62.7 3.1e-97 352.4
Cone4ag0175 . 99 392 TUB Transcription Factor Family AT5G18680 61.3 1.6e-93 340.1
Cone7ag0180 . 98 391 TUB Transcription Factor Family AT5G18680 60.9 4.7e-93 338.6
Cone17ag0479 . 110 408 TUB Transcription Factor Family AT5G18680 57.6 2.8e-90 329.3
Cone20ag0910 . 118 417 TUB Transcription Factor Family AT5G18680 55.9 2.8e-90 329.3
Cone8ag0970 . 116 434 TUB Transcription Factor Family AT5G18680 52.7 2.4e-81 299.7
Cone12ag0937 . 116 433 TUB Transcription Factor Family AT5G18680 53.1 4.1e-81 298.9
Cone6ag1629 . 114 422 TUB Transcription Factor Family AT5G18680 50.3 4.2e-78 288.9
Cone9ag1554 . 114 417 TUB Transcription Factor Family AT5G18680 50.5 2.3e-76 283.1
Cone6ag1629 . 1 422 TUB Transcription Factor Family AT2G18280 61.7 3.0e-140 495.7
Cone9ag1554 . 1 417 TUB Transcription Factor Family AT2G18280 60.1 3.5e-136 482.3
Cone4ag1918 . 1 422 TUB Transcription Factor Family AT2G18280 55.7 1.8e-121 433.3
Cone7ag1830 . 1 421 TUB Transcription Factor Family AT2G18280 54.9 7.7e-120 427.9
Cone7ag1448 . 1 434 TUB Transcription Factor Family AT2G18280 50.1 1.3e-114 410.6
Cone20ag0378 . 1 452 TUB Transcription Factor Family AT2G18280 50.8 2.2e-114 409.8
Cone12ag0937 . 1 433 TUB Transcription Factor Family AT2G18280 51.8 1.8e-113 406.8
Cone8ag0970 . 1 434 TUB Transcription Factor Family AT2G18280 51.3 9.2e-113 404.4
Cone4ag0175 . 1 392 TUB Transcription Factor Family AT2G18280 52.2 7.3e-110 394.8
Cone7ag0180 . 1 391 TUB Transcription Factor Family AT2G18280 51.3 3.6e-109 392.5
Cone14ag0786 . 44 402 TUB Transcription Factor Family AT2G18280 56.7 2.6e-107 386.3
Cone20ag0910 . 1 417 TUB Transcription Factor Family AT2G47900 72.8 7.6e-171 597.4
Cone17ag0479 . 1 408 TUB Transcription Factor Family AT2G47900 72.8 3.0e-167 585.5
Cone7ag0180 . 1 391 TUB Transcription Factor Family AT2G47900 67.9 1.8e-159 559.7
Cone4ag0175 . 1 392 TUB Transcription Factor Family AT2G47900 67.4 6.3e-157 551.2
Cone14ag0786 . 23 402 TUB Transcription Factor Family AT2G47900 66.2 3.0e-143 505.8
Cone7ag1448 . 1 434 TUB Transcription Factor Family AT2G47900 55.6 9.1e-132 467.6
Cone12ag0937 . 1 433 TUB Transcription Factor Family AT2G47900 56.5 1.2e-131 467.2
Cone8ag0970 . 1 434 TUB Transcription Factor Family AT2G47900 54.9 4.2e-129 458.8
Cone20ag0378 . 1 452 TUB Transcription Factor Family AT2G47900 53.0 1.7e-125 446.8
Cone17ag0784 . 1 454 TUB Transcription Factor Family AT2G47900 52.3 4.8e-125 445.3
Cone6ag1629 . 1 422 TUB Transcription Factor Family AT2G47900 54.7 3.5e-123 439.1
Cone9ag1554 . 1 417 TUB Transcription Factor Family AT2G47900 54.9 1.1e-121 434.1
Cone4ag1918 . 1 422 TUB Transcription Factor Family AT2G47900 52.1 9.2e-116 414.5
Cone4ag1499 . 1 418 TUB Transcription Factor Family AT2G47900 51.1 3.3e-113 406.0
Cone7ag1830 . 56 421 TUB Transcription Factor Family AT2G47900 56.3 1.0e-111 401.0
Cone17ag0284 . 53 305 TUB Transcription Factor Family AT1G16070 56.8 5.3e-73 271.9
Cone7ag1448 . 65 434 TUB Transcription Factor Family AT1G43640 67.8 2.4e-144 509.2
Cone8ag0970 . 69 434 TUB Transcription Factor Family AT1G43640 67.5 2.4e-144 509.2
Cone12ag0937 . 69 433 TUB Transcription Factor Family AT1G43640 67.4 3.5e-143 505.4
Cone20ag0378 . 69 452 TUB Transcription Factor Family AT1G43640 64.3 4.5e-138 488.4
Cone17ag0784 . 69 454 TUB Transcription Factor Family AT1G43640 64.8 2.9e-137 485.7
Cone4ag1499 . 65 407 TUB Transcription Factor Family AT1G43640 63.8 4.8e-124 441.8
Cone20ag0910 . 71 417 TUB Transcription Factor Family AT1G43640 52.0 5.5e-104 375.2
Cone17ag0479 . 63 408 TUB Transcription Factor Family AT1G43640 51.5 7.2e-104 374.8
Cone4ag1918 . 72 422 TUB Transcription Factor Family AT1G43640 51.5 2.1e-103 373.2
Cone7ag0180 . 49 391 TUB Transcription Factor Family AT1G43640 51.8 1.0e-102 370.9
Cone14ag0786 . 61 402 TUB Transcription Factor Family AT1G43640 51.4 2.6e-101 366.3
Cone4ag0175 . 50 392 TUB Transcription Factor Family AT1G43640 52.4 3.3e-101 365.9
Cone6ag1629 . 67 422 TUB Transcription Factor Family AT1G43640 51.7 2.8e-100 362.8
Cone9ag1554 . 67 417 TUB Transcription Factor Family AT1G43640 52.0 1.1e-99 360.9
Cone7ag1830 . 77 421 TUB Transcription Factor Family AT1G43640 50.5 4.1e-99 359.0
Cone7ag1830 . 31 421 TUB Transcription Factor Family AT1G47270 61.4 6.2e-130 461.5
Cone4ag1918 . 31 422 TUB Transcription Factor Family AT1G47270 61.2 1.1e-129 460.7
Cone6ag1629 . 1 422 TUB Transcription Factor Family AT1G47270 53.9 6.9e-121 431.4
Cone9ag1554 . 1 417 TUB Transcription Factor Family AT1G47270 54.0 9.0e-121 431.0
Cone7ag1448 . 31 434 TUB Transcription Factor Family AT1G47270 52.4 2.2e-111 399.8
Cone8ag0970 . 28 434 TUB Transcription Factor Family AT1G47270 52.4 3.6e-109 392.5
Cone12ag0937 . 28 433 TUB Transcription Factor Family AT1G47270 52.6 2.3e-108 389.8
Cone4ag0175 . 1 392 TUB Transcription Factor Family AT1G47270 51.7 4.3e-107 385.6
Cone7ag0180 . 1 391 TUB Transcription Factor Family AT1G47270 51.9 7.4e-107 384.8
Cone14ag0786 . 12 402 TUB Transcription Factor Family AT1G47270 50.5 5.0e-103 372.1
Cone6ag1629 . 44 422 TUB Transcription Factor Family AT1G53320 50.1 6.1e-98 355.1
Cone4ag1918 . 58 422 TUB Transcription Factor Family AT1G53320 51.6 1.0e-97 354.4
Cone7ag0180 . 33 391 TUB Transcription Factor Family AT1G53320 51.0 9.8e-96 347.8
Cone4ag0175 . 34 392 TUB Transcription Factor Family AT1G53320 51.2 6.4e-95 345.1
Cone4ag0175 . 99 392 TUB Transcription Factor Family AT3G06380 63.6 3.3e-96 349.0
Cone7ag0180 . 98 391 TUB Transcription Factor Family AT3G06380 64.3 2.2e-95 346.3
Cone14ag0786 . 110 402 TUB Transcription Factor Family AT3G06380 60.4 2.2e-92 336.3
Cone20ag0910 . 122 417 TUB Transcription Factor Family AT3G06380 57.7 4.1e-86 315.5
Cone17ag0479 . 114 408 TUB Transcription Factor Family AT3G06380 55.4 5.9e-85 311.6
Cone12ag0937 . 120 433 TUB Transcription Factor Family AT3G06380 53.2 1.2e-80 297.4
Cone8ag0970 . 120 434 TUB Transcription Factor Family AT3G06380 52.1 1.3e-79 293.9
Cone9ag1554 . 118 417 TUB Transcription Factor Family AT3G06380 52.0 9.2e-78 287.7
Cone4ag1918 . 123 422 TUB Transcription Factor Family AT3G06380 53.2 5.9e-77 285.0
Cone7ag1830 . 125 421 TUB Transcription Factor Family AT3G06380 51.8 2.8e-74 276.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45584 PF03096 Ndr 1.30E-78 CL0028 Cone TF