Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0378 ATGTCATTCAGAAGCATAGTCCGTGATGTTAGGGATGGGTTTGGAAGCTTGTCGAGGCGTAGTTTTGAGTTAAGATTTCCAGGTCATGATGATCATCATCATAGGAGGAAATCACACGGATCGGTCCATGAGTTACTGGACCGGACCATTGTGATCCAGACTAGCAGGTGGGCCAGCTTGCCTCCGGAGTTATTACGAGACGTGGTCAAGAGATTGGAGGCGAGTGAGAGCACATGGCCTGCTCGGAAAAATGTTGTTGCTTGTTCGGCTGTTTGTCGCTCTTGGAGGGAAATGTGTAGAGAAATTGTTACGGGTCCGGAGTATTCCGGAAAGATTACCTTCCCTATCTCGCTCAAGCAGCCTGGTCCTCGAGATGGAACAATCCAATGCTTCATTAAGAGGGACAAATCTAATTTTACTTATCATCTTTTCCTTTGCCTTAGTCCCACTTTGCTTGTAGAGAATGGAAAATTTCTTCTTTCTGCAAAACGGACAAGGAGAACTACTTGCACAGAGTATGTGATCTCAATGGACGCTGATAATATATCAAGATCGAGTAGTACTTACATTGGAAAACTTAGGTCAAATTTTCTCGGGACGAAATTCATCATTTGCGATACACAACCACCTTACAAAAATGCTCAGCAGGTTTCTCAACCAGGTAGAAGCCGAAGATTCTACTCCAAAAAGGTCTCCCCAAAGGTGCCTACAGGCAGCTACACCATTGCTCAAGTCAGTTATGAGCTGAACGTTCTCGGCACAAGGGGCCCACGCCGGATGCACTGCACAATGCTCTCTATCCCAGCCTCTTCCCTTGACCCTGGTGGGTTTGTCCCAGGCCAGCCCAAGCTCCTCCCCTGTTCCCTTGAGGACTCCTTCCGCAGCAACATCTCCTCCTCCTCAAAGTCCATCGATTTCCCCAGCGCCCGGTTCTCTGACATTGGTTCCGGTTTGAACTATGAAGAAGAAGATCAAGATGATCAGAAGGAGATGCGACCCTTGATTCTTCGGAACAAGGCGCCTAGGTGGCACGAGCAGTTGCAGTGTTGGTGTTTGAATTTTAGGGGGAGAGTGACTGTGGCTTCTGTGAAGAACTTTCAGCTGATTGCTGGCACTCAGCTGCCTGTGGCTGCTGCTCCTACTGGAGCACCAGTGGGGGCAGTGGCAGTACAGCTGCAGCCACCAACGGCAACCCAACGGACACAACCGATGAGTCAGTCAGACCATGATAAGATTATCCTTCAGTTTGGAAAGATTGGAAAGGATATGTTTACTATGGATTATAGGTATCCCCTGTCGGCTTTTCAAGCCTTTGCTATCTGCCTTAGCAGCTTCGATACGAAATTGGCATGTGAATAA 1359 48.12 MSFRSIVRDVRDGFGSLSRRSFELRFPGHDDHHHRRKSHGSVHELLDRTIVIQTSRWASLPPELLRDVVKRLEASESTWPARKNVVACSAVCRSWREMCREIVTGPEYSGKITFPISLKQPGPRDGTIQCFIKRDKSNFTYHLFLCLSPTLLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIICDTQPPYKNAQQVSQPGRSRRFYSKKVSPKVPTGSYTIAQVSYELNVLGTRGPRRMHCTMLSIPASSLDPGGFVPGQPKLLPCSLEDSFRSNISSSSKSIDFPSARFSDIGSGLNYEEEDQDDQKEMRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAGTQLPVAAAPTGAPVGAVAVQLQPPTATQRTQPMSQSDHDKIILQFGKIGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1761994 1764823 - Conep20aG0039200.1 Cone20ag0378 460282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0378 452 PRINTS Tubby superfamily signature 336 353 IPR000007 -
Cone20ag0378 452 PRINTS Tubby superfamily signature 239 266 IPR000007 -
Cone20ag0378 452 PRINTS Tubby superfamily signature 173 189 IPR000007 -
Cone20ag0378 452 PRINTS Tubby superfamily signature 430 452 IPR000007 -
Cone20ag0378 452 PRINTS Tubby superfamily signature 189 213 IPR000007 -
Cone20ag0378 452 PRINTS Tubby superfamily signature 354 370 IPR000007 -
Cone20ag0378 452 PRINTS Tubby superfamily signature 409 428 IPR000007 -
Cone20ag0378 452 Pfam Tub family 118 447 IPR000007 -
Cone20ag0378 452 ProSitePatterns Tub family signature 2. 437 452 IPR018066 -
Cone20ag0378 452 CDD F-box_AtTLP-like 57 101 - -
Cone20ag0378 452 Gene3D - 52 102 - -
Cone20ag0378 452 FunFam Tubby-like F-box protein 52 105 - -
Cone20ag0378 452 Gene3D Tubby Protein; Chain A 117 446 IPR025659 -
Cone20ag0378 452 SUPERFAMILY Tubby C-terminal domain-like 106 452 IPR025659 -
Cone20ag0378 452 SUPERFAMILY F-box domain 52 100 IPR036047 GO:0005515(InterPro)
Cone20ag0378 452 Pfam F-box-like 57 100 IPR001810 GO:0005515(InterPro)
Cone20ag0378 452 ProSitePatterns Tub family signature 1. 354 367 IPR018066 -
Cone20ag0378 452 PANTHER TUBBY-RELATED 52 451 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0378 Cone-Chr20:1761994 Cone8ag0970 Cone-Chr8:9140265 1.45E-222 dispersed
Cone17ag0784 Cone-Chr17:6042285 Cone20ag0378 Cone-Chr20:1761994 5.62E-306 wgd
Cone20ag0378 Cone-Chr20:1761994 Cone4ag1499 Cone-Chr4:11673097 2.96E-213 wgd
Cone20ag0378 Cone-Chr20:1761994 Cone7ag1448 Cone-Chr7:10255177 5.11E-237 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45584 PF03096 Ndr 1.30E-78 CL0028 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0378 K19600 - rcu:8283226 697.197