Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0385 ATGGACATAGACCAAATTCCAGAGAATCCACAGCGTGGGTCCAACCACCGTAGGGCCCACTCCGACACCTCGTTCCGATTCTCTAACCTAGACGACCTCCTCCTCTTTGACCCCTCCGACCTTGACCTCTCCTCCCTCCCTTCCCCTTCTCCCACCGCTACACGTGGGCCACCCAAACCCGTTGATTCCTCCAACTCCAGATCCTCTGACGATTCCTCCGGCCCAAATCGCAGGCCCACTGGCTCCGGCCCAATCGGGTCTCACTTCCGGAGCTTGTCTGTAGATTCCGACTTCTTCGACGGCCTCGACCTCTCTGGAGATGGGGCGGAAGCGGACAGATTTGGCGGGAGAATGGCGGTGGGGGATAAGAGGCTGGTTCGTCATAGGCATAGCAATTCCATGGATGGGTCTTATACGTCGTCGTTTGATACTGATTCATTATTGGCCATTGATGGGGCTAAGAAGGCTATGCACCCTGAGAAACTGGCCGAGCTTTCTCTGATTGATCCTAAGAGAGCTAAAAGAATTCTTGCTAATAGACAATCAGCTGCACGGTCAAAGGAGAGGAAAGTACTTTATACAAATGAGCTGGAGAGGAAGGTGCATATGCTTCAGTCAGAAGCAACCACCCTATCTGCACAGGTCACTATTTTACAGAGAGATACCACTGGATTGACTACTGAGAACAGGGAACTCAAACTGCGTTTGCAAGCTATGGAACAGCAAGCCCAACTTAGAGATGCTCTGAATGAGACATTGAAGGATGAAGTGCAACGGCTAAAGATAGCAACAGGACAGAATCCGGTTTCAAACAGGAACCATTTTAACAGAGGGGTACCGCCTCAATTTCATCAGGCATCTGCTGATTCTTGGCCTTCTTCAACTGCAGGAGGGTCCAGTAACATATCTGATAACAACTCTGTTAGTGACAACTTGTATTGGGACATTAGAGGTTGA 957 50.16 MDIDQIPENPQRGSNHRRAHSDTSFRFSNLDDLLLFDPSDLDLSSLPSPSPTATRGPPKPVDSSNSRSSDDSSGPNRRPTGSGPIGSHFRSLSVDSDFFDGLDLSGDGAEADRFGGRMAVGDKRLVRHRHSNSMDGSYTSSFDTDSLLAIDGAKKAMHPEKLAELSLIDPKRAKRILANRQSAARSKERKVLYTNELERKVHMLQSEATTLSAQVTILQRDTTGLTTENRELKLRLQAMEQQAQLRDALNETLKDEVQRLKIATGQNPVSNRNHFNRGVPPQFHQASADSWPSSTAGGSSNISDNNSVSDNLYWDIRG 318
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
20 1803649 1807292 + Conep20aG0039900.1 Cone20ag0385 460289
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0385 318 MobiDBLite consensus disorder prediction 38 88 - -
Cone20ag0385 318 MobiDBLite consensus disorder prediction 264 280 - -
Cone20ag0385 318 Pfam bZIP transcription factor 171 225 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0385 318 Gene3D - 171 223 - -
Cone20ag0385 318 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 169 232 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0385 318 SUPERFAMILY Leucine zipper domain 171 225 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0385 318 MobiDBLite consensus disorder prediction 264 304 - -
Cone20ag0385 318 Coils Coil 222 242 - -
Cone20ag0385 318 MobiDBLite consensus disorder prediction 57 80 - -
Cone20ag0385 318 Coils Coil 194 214 - -
Cone20ag0385 318 SMART brlzneu 167 231 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0385 318 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 3 283 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone20ag0385 318 MobiDBLite consensus disorder prediction 286 304 - -
Cone20ag0385 318 CDD bZIP_plant_RF2 172 221 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0385 318 FunFam probable transcription factor PosF21 170 223 - -
Cone20ag0385 318 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1197 Cone-Chr12:9407322 Cone20ag0385 Cone-Chr20:1803649 3.02E-42 dispersed
Cone17ag1388 Cone-Chr17:9607920 Cone20ag0385 Cone-Chr20:1803649 3.77E-39 dispersed
Cone1ag1620 Cone-Chr1:57637603 Cone20ag0385 Cone-Chr20:1803649 4.17E-52 dispersed
Cone20ag0093 Cone-Chr20:425791 Cone20ag0385 Cone-Chr20:1803649 7.05E-40 dispersed
Cone20ag0385 Cone-Chr20:1803649 Cone5ag0141 Cone-Chr5:607378 1.96E-51 dispersed
Cone17ag0790 Cone-Chr17:6123935 Cone20ag0385 Cone-Chr20:1803649 3.58E-108 wgd
Cone20ag0385 Cone-Chr20:1803649 Cone4ag1506 Cone-Chr4:11704846 1.50E-50 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45586 None None None None Cone TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0385 K20557 - csv:101207973 314.309