Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0386 ATGGATTTGATTGAAGGTGTCGGAGAAAGCTCGTCGCCGCCTAGAAGCTTCGGAGGAGGATTCTCTAACCTTGATATAAGAAACGATGTGTATAACAGATTGGTGGAGTGTCGAAATGAGGAGGCAGTGAGTAATCCTGATTTTCGTGGACAGTTGGATGCTCACTTCAATCGCTTGCCTCCAAGTTATGGACTAGATATTAACATGGAAAGAGTGGAAGATGTCTTGTTACATCAGAAGCTTCTTGCATTAGCAAAGGATCCAGAAAAGCGACCTGTTTACAATATCCGTTTCCTGGAGCATTTAAATACTCGGTCAGATGTTAATGATGATCAAGAATTTACAAGTATTATTTCTGCTGAAAGGCTATCTTGTGTATCAGTTGATGAAAGAGTTCTAAGATCATCCAAGAGAACCAGGGATTGCACGGTTGACTTTGAGCCCTGCTCCAAGCTTGAGGACCTGAATTTGGATGTTAGGAAGAATACAGTGGATACAGATGAGAGATGTGTTATGGATAATATTAGCTTAAGGCAAGATAATTCACAAACGTCGAAGGTAATTCATGAAGTAATATTTTCTACTGTTGACAAGCCAAAGATTCTTAGCCAGCTTTCTGCTTTACTTTCGGATATAGGACTTAACATTCGTGAAGCCCACGTATTCTCAACAACTGATGGCTACTCCTTGGATGTATTTGTGGTTGATGGATGGCCTGTTGAGGAAACAGATGGTCTATATGAAGCAATGAAAACAGCAATTGTTAGATGTGAGGGGTCATGGTCAGGTTCTCATTCAACAGTCGAGAAAGCTTTAGCTGTGCAATCAAAATGTGAAGATTGGGAAATAGACAGAAGGTTATTGAAGATGGGAGAAAGACTTGCTTCTGGATCTTGTGGAGATTTGTATCATGGAGTCTATCTTGGTCAAGACGTAGCAGTTAAGATACTTCGATCTGAACATCTGAATGATGCTTTAGAGGATGAATTCACTCAAGAAGTAGCAATTCTCAGGGAGGTCCAACATAGAAATGTTGTTCGCTTCATTGGCGCATGTACAAGATTTCCACAATTGTGCATTGTAACAGAGTATATGCCAGGGGGGAGTCTTTATGATTACTTACATAAGAACCATAATGCCTTGAAGCTCCCTCAGCTACTGAAATTTGCTATAGATGTCTGCCAAGGGATGGAATATCTTCATCTCAAGAACATCATTCACAGGGATCTAAAGACAGCTAATTTGCTAATGGACAGTCAAAATGTTGTTAAAGTAGCAGATTTTGGGGTTGCTCGATTCCAGAACCAGGCGGGAGTAATGACTGCAGAAACTGGAACATACAGATGGATGGCACCTGAGGTGATAAACCATCAGGCATATGATCAAAAAGCAGATGTGTTCAGTTTTGCCATTGTACTGTGGGAACTGGTTACAGCAAAGGTTCCTTATGAAACCATTACTCCACTACAAGCTGCTCTTGGTGTGAGACAGGGACTACGTCCAGAGCTCCCCACGAAAGCACATCCTAAACTGTTGGAACTAATGCAGAAATGTTGGGATGCTGTGCCTGAAAACCGACCGGCCTTCGCTGAGATAAAACTTGAACTCGAAAATCTCTTACAGGAAACCAATGGTGTAGCTAACGGCACTTGA 1653 41.62 MDLIEGVGESSSPPRSFGGGFSNLDIRNDVYNRLVECRNEEAVSNPDFRGQLDAHFNRLPPSYGLDINMERVEDVLLHQKLLALAKDPEKRPVYNIRFLEHLNTRSDVNDDQEFTSIISAERLSCVSVDERVLRSSKRTRDCTVDFEPCSKLEDLNLDVRKNTVDTDERCVMDNISLRQDNSQTSKVIHEVIFSTVDKPKILSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEETDGLYEAMKTAIVRCEGSWSGSHSTVEKALAVQSKCEDWEIDRRLLKMGERLASGSCGDLYHGVYLGQDVAVKILRSEHLNDALEDEFTQEVAILREVQHRNVVRFIGACTRFPQLCIVTEYMPGGSLYDYLHKNHNALKLPQLLKFAIDVCQGMEYLHLKNIIHRDLKTANLLMDSQNVVKVADFGVARFQNQAGVMTAETGTYRWMAPEVINHQAYDQKADVFSFAIVLWELVTAKVPYETITPLQAALGVRQGLRPELPTKAHPKLLELMQKCWDAVPENRPAFAEIKLELENLLQETNGVANGT 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1812146 1822981 + Conep20aG0040000.1 Cone20ag0386 460290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0386 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 405 417 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0386 550 Gene3D Phosphorylase Kinase; domain 1 275 365 - -
Cone20ag0386 550 FunFam Serine/threonine-protein kinase isoform 1 278 366 - -
Cone20ag0386 550 PRINTS Tyrosine kinase catalytic domain signature 464 486 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0386 550 PRINTS Tyrosine kinase catalytic domain signature 507 529 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0386 550 PRINTS Tyrosine kinase catalytic domain signature 362 375 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0386 550 PRINTS Tyrosine kinase catalytic domain signature 445 455 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0386 550 PRINTS Tyrosine kinase catalytic domain signature 399 417 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0386 550 CDD STKc_MAP3K-like 294 532 - -
Cone20ag0386 550 SUPERFAMILY ACT-like 189 252 IPR045865 -
Cone20ag0386 550 SUPERFAMILY Protein kinase-like (PK-like) 274 539 IPR011009 -
Cone20ag0386 550 Gene3D Transferase(Phosphotransferase) domain 1 366 548 - -
Cone20ag0386 550 ProSiteProfiles Protein kinase domain profile. 288 540 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0386 550 MobiDBLite consensus disorder prediction 1 20 - -
Cone20ag0386 550 SMART serkin_6 288 540 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0386 550 Pfam Protein tyrosine and serine/threonine kinase 288 535 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0386 550 ProSiteProfiles ACT domain profile. 190 264 IPR002912 -
Cone20ag0386 550 PANTHER SERINE-THREONINE PROTEIN KINASE 241 538 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0386 Cone-Chr20:1812146 Cone8ag0877 Cone-Chr8:8624044 1.83E-167 dispersed
Cone17ag0791 Cone-Chr17:6136205 Cone20ag0386 Cone-Chr20:1812146 0 wgd
Cone20ag0386 Cone-Chr20:1812146 Cone9ag1239 Cone-Chr9:9076150 2.93E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82538 PF07714 PK_Tyr_Ser-Thr 8.60E-63 CL0016 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0386 - - - 0.0