Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0390 ATGTCGAGGTTCAATGTCGGTGGAAAGGTGGTAGAGCGAGTTGACTTGTTGAGGAAGAAGCACCGGATGTGGCGTTTGGATGTATGGCCTTTTGCTCTTCTCTATGCCGTCTGGCTAACTGCGATTGTTCCTAGCATAGACTTTGGAGATGCCGCCATTGTTTTCGGTGGCCTTGTAGCTCTTCACGTTTTGTTCTGGCTTTTCACAGCTTGGTCAGTTGATTTCAAATGTATTGTCCAATACAGCAAGGTCAATGATATTCAGCATTCAGATGCGTGCAAGATAACTCCAGCCAAATTTTCTGGTTCTAAAGAAGTTGTGCCTCTTCATTTCCGTAACCTACTGGCAGCCTCATCCGCAGGTGACGCGGAGGAAATTTACTTTGATTTCAGAAAGCAGCGTTTTCTCTATTCAAAGGATAGGGAGACATTCTCTAAGCTTCCGTATCCTACTAAAGAAACATTTGGTTACTATGCTAAAAGTTCTGGCCATGGCTCTGAAGCTAAAGTTGCAGCTGCGGCTGAAAAATGGGGACGCAACGTATTTGAATATCCACAGCCCACTTTCCAAAAACTGATGAAAGAGCACTGCATGGAGCCCTTTTTTGTATTTCAGGTTTTTTGTGTGGGACTTTGGTGTTTGGATGAGTATTGGTACTACAGTATATTTACTCTATTTATGCTATTTATGTTCGAGTCAACAATGGCAAAAAGTCGGCTGAAAACTCTTACTGAGCTCAGGCGTGTTAGAGTGGATAGTCAGACACTAATGGTGCATAGATGTGGGAAATGGGTGAAACTCTCTGGGACGGACCTTTTGCCAGGGGATGTTGTCTCCATTGGGCGCTCCTCCGATCAAAATGGAGAAGATAAGTGTGTGCCAGCAGACATGCTTATATTGGCTGGAAGTGCTATTGTGAATGAAGCCATTCTTACTGGCGAGTCTACCCCACAATGGAAGGTATCAATATCTGGCAGAGGAACTGCAGAAAGATTATCTGCAAAGCGAGATAAAAGTCATGTATTATTTGGTGGGACAAAAATATTGCAGCATACGCCAGATAAGACTTTCCCTTTAAGAACCCCTGATGGTGGTTGCCTAGTTGTTGTATTAAGAACTGGGTTTGAAACAAGTCAGGGAAAGCTGATGCGAACAATTTTGTTTTCTACTGAACGGGTTACTGCTAACAGCTGGGAAAGTGGACTGTTCATTCTTTTCTTAGTTGTATTTGCTGTGATTGCTGCTGGTTATGTACTTAAAAAGGGTCTGGAGGATCCCACAAGAAGCAAGTACAAGCTTTTACTTAGTTGTTCGCTCATAATTACTTCTGTGATTCCTCCTGAGCTGCCAATGGAATTGTCAATAGCTGTTAATACATCTCTCATCGCCCTAGCACGACGTGGAATATTTTGTACAGAGCCATTCCGAATCCCTTTTGCTGGGAAGGTTGATATTTGTTGTTTTGATAAAACTGGAACATTAACATCAGATGACATGGAGTTCCGTGGAGTTGTTGGCTTGGCTGACAATGTGGATTTGGAGACTGATATGACTAGAGTGCCTTTGCATACAGTTGAAATACTGGCATCTTGTCATTCTCTGGTGTTTGTGGACAACAAGCTGGTTGGTGATCCTCTTGAGAAAGCTTCACTTAAGGGAGTTGACTGGTCATATAAATCTGATGAGAAGGCAATGCCGAAAAAAGGCAGTGGCAATGCTGTACAGATTGTTCAGAGACACCACTTTGCTTCACATTTGAAAAGAATGGCAGTTGTTGTTCGTATTCAGGAGGAATTTTTAGCTTTTGTGAAGGGTGCCCCTGAAACTATCCAGGAGAGACTCATTGATGTGCCTTCTTCATATGTTGAGACTTATAAGAGATATACTCGTCAGGGCTCTCGTGTTCTTGCTCTTGCTTTCAAGACTCTTCCAGATATGACGGTTAGTGAAGCTAGAAGCCTGGATAGGGATATAGTGGAGAGTGGCCTTACATTTGCTGGTTTTGCGGTGTTTAACTGTCCTATTAGAGCAGACTCAGGTACAGTTCTATCTGGACTGAAAGCATCATCACATGATTTGGTGATGATTACGGGTGATCAAGCTTTAACGGCTTGCCATGTTGCTGGCCAAGTTCATATCATATCAAAACCCGCATTAATTCTAACTCCCAAAAGGACAGCTGGAGGATATCAGTGGATATCTCCAGATGAGGTGGAGATAATTCCCTACAGTGAGAAAGAGGTTGAGGCTTTGTCAGAGAGTCATGATCTTTGTATCGGAGGTGACTGCATAGAAATGCTCCAGCAGACTTCTGCTGTTCTACAAGTGATTCCATTTATAAAGGTTTTTGCAAGAGTTGCTCCCGTACAAAAAGAACTCATCTTGACAACCTTCAAAACAGTGGGAAGAATAACACTCATGTGTGGAGATGGAACCAATGATGTTGGTGCTCTTAAGCAGGCCCATGTAGGAGTAGCTTTATTAAATGCAGTACCTCCAGCCCAACCTAAAACCACCTCAGAAAAGCCCAAAGACGAAGGCACAAAGCCTGCCAAATCAAAAAAACCCAAGCCCACATTGGACAATGCTGTTCAAACTGGAGAGAATTCTTCAAAAGGTAAGCCCCACTCAGCAATAAACCGCAATCTTACAGCAGCCGAGATGCAAAAACAGAAGCTAAAGAAACTCATGGAAGAAATGAACGAGGACGGTGATGGCCGTTCAGCTCCAATTGTCAAGCTAGGGGATGCCTCCATGGCATCACCCTTCACAGCAAAGGATGCATCAGTGGCCCCCACCATAGACATAATCCGTCAAGGGAGAAGCACTCTAGTAACCACACTCCAAATGTTCAAAATCCTTGGACTCAACTGCCTAGCCACGGCTTATATCTTGAGCGTCATGTACTTGGACGGAGTGAAGCTTGGAGACATTCAAGCGACTATAAGTGGAATATTCACTGCTGCTTTTTTCCTCTTCATCTCACATGCTCGCCCCCTTCCCACCCTCTCTGCAGAACGGCCCCACCCTAACATCTTCTGTGCCTATGTGTTCCTTTCTCTATTAGGTCAATTCACTATCCATATATCTTTCTTGATTTGGTCGGTGAAAGAGGCCGAGAAATTTATGCCCGAAGAGTGCATAGAGCCAGATTCGGAATTTCATCCCAATTTGGTAAACACGGCTTCTTATATGGTGGGCTTGATGCTTCAAGTCGCTACTTTTGCTGTGAATTATATGGGTCATCCTTTTAACCAGAGTATTTCAGAGAACAAGCCGTTCCTATATGCCTTGCTTTCTGCAGTTGGGTTCTTTGTTGTGATCACTTCTGATCTGTTTAGAGGCCTTAATGATTCGTTGAAGCTGGTTCCTCTGCCTGTTGGATTGAGGAATAAGTTGTTGGGTGGTGCTCTTTTTACCTTTTTGTCCTGCTACCTTCTGGAGAGATTTCTGAGGTGGGTTTACCCTGGTAAGGTCCCAGATTGGAAGAAACGACAACGTTCTGCTTCAGCTAATTTAGAGAAGAAACAGGCTTAA 3537 43.71 MSRFNVGGKVVERVDLLRKKHRMWRLDVWPFALLYAVWLTAIVPSIDFGDAAIVFGGLVALHVLFWLFTAWSVDFKCIVQYSKVNDIQHSDACKITPAKFSGSKEVVPLHFRNLLAASSAGDAEEIYFDFRKQRFLYSKDRETFSKLPYPTKETFGYYAKSSGHGSEAKVAAAAEKWGRNVFEYPQPTFQKLMKEHCMEPFFVFQVFCVGLWCLDEYWYYSIFTLFMLFMFESTMAKSRLKTLTELRRVRVDSQTLMVHRCGKWVKLSGTDLLPGDVVSIGRSSDQNGEDKCVPADMLILAGSAIVNEAILTGESTPQWKVSISGRGTAERLSAKRDKSHVLFGGTKILQHTPDKTFPLRTPDGGCLVVVLRTGFETSQGKLMRTILFSTERVTANSWESGLFILFLVVFAVIAAGYVLKKGLEDPTRSKYKLLLSCSLIITSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFRGVVGLADNVDLETDMTRVPLHTVEILASCHSLVFVDNKLVGDPLEKASLKGVDWSYKSDEKAMPKKGSGNAVQIVQRHHFASHLKRMAVVVRIQEEFLAFVKGAPETIQERLIDVPSSYVETYKRYTRQGSRVLALAFKTLPDMTVSEARSLDRDIVESGLTFAGFAVFNCPIRADSGTVLSGLKASSHDLVMITGDQALTACHVAGQVHIISKPALILTPKRTAGGYQWISPDEVEIIPYSEKEVEALSESHDLCIGGDCIEMLQQTSAVLQVIPFIKVFARVAPVQKELILTTFKTVGRITLMCGDGTNDVGALKQAHVGVALLNAVPPAQPKTTSEKPKDEGTKPAKSKKPKPTLDNAVQTGENSSKGKPHSAINRNLTAAEMQKQKLKKLMEEMNEDGDGRSAPIVKLGDASMASPFTAKDASVAPTIDIIRQGRSTLVTTLQMFKILGLNCLATAYILSVMYLDGVKLGDIQATISGIFTAAFFLFISHARPLPTLSAERPHPNIFCAYVFLSLLGQFTIHISFLIWSVKEAEKFMPEECIEPDSEFHPNLVNTASYMVGLMLQVATFAVNYMGHPFNQSISENKPFLYALLSAVGFFVVITSDLFRGLNDSLKLVPLPVGLRNKLLGGALFTFLSCYLLERFLRWVYPGKVPDWKKRQRSASANLEKKQA 1178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1849950 1858168 - Conep20aG0040400.1 Cone20ag0390 460294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0390 1178 PANTHER CATION-TRANSPORTING ATPASE-RELATED 9 1161 IPR006544 GO:0006874(PANTHER)|GO:0015662(PANTHER)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0019829(PANTHER)|GO:0030176(PANTHER)|GO:0055085(PANTHER)|GO:0140358(InterPro)
Cone20ag0390 1178 SUPERFAMILY Calcium ATPase, transduction domain A 254 386 IPR008250 -
Cone20ag0390 1178 ProSitePatterns E1-E2 ATPases phosphorylation site. 489 495 IPR018303 -
Cone20ag0390 1178 Coils Coil 883 903 - -
Cone20ag0390 1178 Gene3D - 668 835 IPR023214 -
Cone20ag0390 1178 FunFam Cation-transporting ATPase 668 843 - -
Cone20ag0390 1178 MobiDBLite consensus disorder prediction 830 881 - -
Cone20ag0390 1178 ProSitePatterns Hypothetical cof family signature 2. 808 830 - -
Cone20ag0390 1178 MobiDBLite consensus disorder prediction 839 856 - -
Cone20ag0390 1178 Pfam Cation transport ATPase (P-type) 539 613 - -
Cone20ag0390 1178 NCBIfam ATP13A2 family polyamine export P-type ATPase 38 1134 IPR006544 GO:0016020(InterPro)|GO:0140358(InterPro)
Cone20ag0390 1178 Pfam E1-E2 ATPase 255 467 - -
Cone20ag0390 1178 FunFam Cation-transporting ATPase 225 387 - -
Cone20ag0390 1178 SFLD p-type atpase 468 942 IPR044492 -
Cone20ag0390 1178 CDD P-type_ATPase_cation 177 1094 IPR047820 -
Cone20ag0390 1178 Gene3D - 223 387 - -
Cone20ag0390 1178 MobiDBLite consensus disorder prediction 859 881 - -
Cone20ag0390 1178 SFLD Haloacid Dehalogenase 468 942 - -
Cone20ag0390 1178 SUPERFAMILY Calcium ATPase, transmembrane domain M 151 1156 IPR023298 -
Cone20ag0390 1178 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 493 677 IPR023299 GO:0000166(InterPro)
Cone20ag0390 1178 Gene3D - 483 667 IPR023299 GO:0000166(InterPro)
Cone20ag0390 1178 FunFam Cation-transporting ATPase 483 667 - -
Cone20ag0390 1178 PRINTS P-type cation-transporting ATPase superfamily signature 307 321 - -
Cone20ag0390 1178 PRINTS P-type cation-transporting ATPase superfamily signature 487 501 - -
Cone20ag0390 1178 PRINTS P-type cation-transporting ATPase superfamily signature 808 827 - -
Cone20ag0390 1178 PRINTS P-type cation-transporting ATPase superfamily signature 689 699 - -
Cone20ag0390 1178 NCBIfam HAD-IC family P-type ATPase 402 507 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone20ag0390 1178 SUPERFAMILY HAD-like 482 835 IPR036412 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0390 K14950 - vvi:100257916 1998.02