Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0391 ATGGCAGATCTTGTTAGCTACGGAAATGCCGACCGCAACATCGAGCAGGCATTAGTTGTTTTGAAGAAGGGCGCTCAACTGCTCAAGTATGGTCGTAAGGGAAAGCCTAAGTTTTGTCCATTTAGGCTTTCGGGTGATGAGTCAGCTTTGATCTGGATTTCAAGTAAAGGTGAAAGAAGTTTGAAGTTAGCTTCTATCTTGAGAATTATTCCTGGACAAAGAACTGCTGTCTTCGAACGATACCTGCGTCCTGAAAAGGATTATTTGTCCTTCTCTCTTATATACAACGACGGGAAGCGGTCCCTAGATTTGATTTGCAAGGATAAAGTTGAAGCAGAGGTTTGGATTGCAGGCCTGAAAGCATTATTAACATCTGATCAAAGTGGACGCTCCAAAATCGATGGATGGAATGATGGAGGCCTCTACCCTGATAACAGCAGTGATTTGACTACAAATAGCATAAGTGATAGCTCCAATAGTGCAACAGGAGATACTAGCTCTTCAGAGGTCTCTATTAGTCTAAACCTGAATACATCTCCAAAGAGTTTTAGGCCTGAGAGTTCTTCACTGTCTGAAAGGTCACATGTTCCATTAAGCCAGACAAACATGCAAATAAAAGGATCTGGTTCAGATGCTTTTCGAGTTAGCGTTTCAAGTGCTCCAAGCACCTCTAGTCATGGTTCTGCTCCAGATGATTGTGACGCTTTAGGGGATGTATACATATGGGGTGAGGTTATTAGTGATAGTGTTGTGAAAGTCTGGGCTGATAAAAATGCTAACACTACAAACCTGAGGGCTGATGTCCTTCTTCCTCGGGCATTGGAGTCCAATGTTGTTTTAGATATAAGTCATATAGCCTGTGGGGTCAGGCATGCTGCCCTGGTCACGAGGCAAGGTGAAGTTTTCACATGGGGAGAGGAATCTGGTGGTCGACTTGGCCATGGTGTAGGGAGGGATGTTATTCAACCTTGTCTAGTTGAATCTCTAGCAGCTAATTGTGTTGATTTTGTTGCATGTGGAGAGTTCCACACTTGTGCGGTTACAATGACTGGGGATCTTTATACGTGGGGAGATGGTACTCATAATGCAGGGCTTCTTGGTCATGGTAGTGATGTCAGCCATTGGATACCAAAGAGAATTGCGGGTCCCCTCGAGGGCCTTCAAATTGCATCCGTGTCATGTGGGCCCTGGCACACTGCCTTGGTAACATCAATGGGACAGCTCTTCACATTTGGTGATGGAACATTTGGTGCATTGGGTCATGGAGATAGACAAAGTTTTTCATATCCAAGAGAAGTGGAATCTTTATTGGGATTGAGGACAATTGCTGTGGCTTGTGGGGTGTGGCATACTGCTGCTGTGGTAGAGGTTATTATGACGCAATCTAGTTCAAGCATTTCATCAGGTAAATTATTTACTTGGGGGGATGGAGATAAATACCGTTTAGGTCATGGAGACAAGGATCCCAGACTTAAACCTACATGTGTGCCTCCATTAATTGATTACAATTTTCACAGAGTCGCTTGTGGCCATAGCATAACTGTTGGCTTGACCAAATCAGGACAAGTTTTCACAATGGGAAGCACTGTTTATGGTCAGCTTGGGGATCCCCGCTCTGATGGAAAGGTACCTTGTTTGGTAGAAAGTAAGCTCGTTGGGGATTGTGTTGAAGAAGTTGCTTGTGGTGCATATCATGTGGCTGCGCTAACATCAAAAAATGAAGTTTATACATGGGGCAAGGGTGCAAATGGGAGGTTAGGCCATGGAGATGTGGAAGATAGGAAAACGCCAACTTTGGTTGAAGCTTTAAAGGACAGGCATGTGAAATATATTTCTTGTGGTTCGAATTATACAGCAGCTATTTGTCTTCATAAATGGGTTTCGGGTTCTGAGCAATCCCAGTGCTCTGCTTGTAGACAGGCTTTTGGGTTCACTAGAAAGAGACATAACTGCTATAACTGTGGACTTGTTCACTGCCATTCTTGCAGCTCAAGAAAAGCTTTAAGAGCAGCATTGGCTCCTATTCCCGGAAAACCATATCGTGTGTGTGATTCTTGTTTTGTGAAATTGAACAAGATGTCAGAAGTTAGTTTTAATAAGAAAAATGCCATCATGCCTCGCTTGTCAGGTGAGAATAAGGAAAGGTTAGAGAAGAGTGATATAAGATCGTCAAAGTCTATTCCTTATAATTTAGATTTGATAAAGCAACTAGATAGCAAAGCAGCTAAGCAACAAGGAAAGAAGGGTGATATGTTTTCCCTTGTTCGAGCCACTCAAGCTCCTTCATTGTTGCAGCTTAAAGATGTTGTTCTTTCCACCACTGTTGATCTACGACGAGCTACTCCCAGGCCAATCCTTACAGGCACTGGAGTAAGTTCTCGGCCCGTGTCACCTTTCTCTGGGAGGCCAAGCCCTCCTCGATCTGCTACACCTGTTCCCACAGCAATGGGGCTTTCCTTCTCCAGTAGTAATACTGATAGTTTGAGGAAAACAAATGAACTTTTGAATCAAGAAGTGCTTAAGCTACGTGCACAGGTTGAGAGCATGAGACAAAGATGTGAGCTCCAGGAACAAGAAATTCAGAATTCAGGAAGGAAAACACAAGAAGCTATGGCATTGGCTGCAGAGGAATCTGCTAAATCAAAAGCAGCTAAGGAAGTTATTAAGTCACTAACAGCTCAGCTCAAGGATATGGCCGAGAGGCTACCTCCAGGGGCTTATGACACTGAGAACATGACACCAGTATATCTCCCCAATGGTCTGGAGCCAAATGGGGTCCATTACTTGGCCCCAAGTGTGGAGAATCATTCAAGATCTGATTCTATTAGCAGCTCTTCTTTGGCTTCTCCAACTGCTATTGACTCTCTCAATTTAGCAAGCCGAGGGGGTCTACATTCACCAAGGGAACTCCCTGGAATCAATGAAACTAATCTCCAACAGGAGCGACGATTGCCAACCACTAATGGGGTCCACACTAAGAGCAGTAATAGTGTGTCTGAAGCAATTATTGGCAAGGAATTTGGTGGGCCCCTCCAAGATACTACTGATAGTACGAGGTCTAAAAACTCTACTCAGCCCAGTAATAATAATGCTATCCAAGTTGAGGCGGAATGGATCGAACAATATGAGCCCGGTGTATATATAACTCTCGTGGCATTACAGGATGGAACTAGAGATCTTAAACGAGTCCGTTTCAGTCGGAGAAGATTTGGAGAGCATCAAGCAGAGAATTGGTGGTCAGAGAATCGTGAGAAGGTGTATCAGAAATATAATGTTCGTGGGTCAGACCAGTCTTCAGTTTCGGGCCAGGCCCCACGGAGATCAGACGGGCCTGTCTCACCGGCTTCTCAGAAGCCTTAG 3360 44.38 MADLVSYGNADRNIEQALVVLKKGAQLLKYGRKGKPKFCPFRLSGDESALIWISSKGERSLKLASILRIIPGQRTAVFERYLRPEKDYLSFSLIYNDGKRSLDLICKDKVEAEVWIAGLKALLTSDQSGRSKIDGWNDGGLYPDNSSDLTTNSISDSSNSATGDTSSSEVSISLNLNTSPKSFRPESSSLSERSHVPLSQTNMQIKGSGSDAFRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEVISDSVVKVWADKNANTTNLRADVLLPRALESNVVLDISHIACGVRHAALVTRQGEVFTWGEESGGRLGHGVGRDVIQPCLVESLAANCVDFVACGEFHTCAVTMTGDLYTWGDGTHNAGLLGHGSDVSHWIPKRIAGPLEGLQIASVSCGPWHTALVTSMGQLFTFGDGTFGALGHGDRQSFSYPREVESLLGLRTIAVACGVWHTAAVVEVIMTQSSSSISSGKLFTWGDGDKYRLGHGDKDPRLKPTCVPPLIDYNFHRVACGHSITVGLTKSGQVFTMGSTVYGQLGDPRSDGKVPCLVESKLVGDCVEEVACGAYHVAALTSKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYISCGSNYTAAICLHKWVSGSEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPIPGKPYRVCDSCFVKLNKMSEVSFNKKNAIMPRLSGENKERLEKSDIRSSKSIPYNLDLIKQLDSKAAKQQGKKGDMFSLVRATQAPSLLQLKDVVLSTTVDLRRATPRPILTGTGVSSRPVSPFSGRPSPPRSATPVPTAMGLSFSSSNTDSLRKTNELLNQEVLKLRAQVESMRQRCELQEQEIQNSGRKTQEAMALAAEESAKSKAAKEVIKSLTAQLKDMAERLPPGAYDTENMTPVYLPNGLEPNGVHYLAPSVENHSRSDSISSSSLASPTAIDSLNLASRGGLHSPRELPGINETNLQQERRLPTTNGVHTKSSNSVSEAIIGKEFGGPLQDTTDSTRSKNSTQPSNNNAIQVEAEWIEQYEPGVYITLVALQDGTRDLKRVRFSRRRFGEHQAENWWSENREKVYQKYNVRGSDQSSVSGQAPRRSDGPVSPASQKP 1119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1862657 1870072 - Conep20aG0040500.1 Cone20ag0391 460295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0391 1119 CDD FYVE_like_SF 634 687 - -
Cone20ag0391 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 468 516 IPR000408 -
Cone20ag0391 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 351 402 IPR000408 -
Cone20ag0391 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 520 569 IPR000408 -
Cone20ag0391 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 298 347 IPR000408 -
Cone20ag0391 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 406 454 IPR000408 -
Cone20ag0391 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 574 621 IPR000408 -
Cone20ag0391 1119 MobiDBLite consensus disorder prediction 784 826 - -
Cone20ag0391 1119 Pfam Transcription factor BRX N-terminal domain 876 912 IPR027988 -
Cone20ag0391 1119 Pfam Transcription factor regulating root and shoot growth via Pin3 1035 1090 IPR013591 -
Cone20ag0391 1119 MobiDBLite consensus disorder prediction 1092 1106 - -
Cone20ag0391 1119 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 636 697 IPR013083 -
Cone20ag0391 1119 Gene3D - 186 461 IPR009091 -
Cone20ag0391 1119 SUPERFAMILY FYVE/PHD zinc finger 625 697 IPR011011 -
Cone20ag0391 1119 ProSiteProfiles BRX domain profile. 1036 1091 IPR013591 -
Cone20ag0391 1119 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 392 402 IPR000408 -
Cone20ag0391 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 351 405 IPR000408 -
Cone20ag0391 1119 MobiDBLite consensus disorder prediction 1092 1119 - -
Cone20ag0391 1119 FunFam PH, RCC1 and FYVE domains-containing protein 1 459 630 - -
Cone20ag0391 1119 Gene3D - 462 635 IPR009091 -
Cone20ag0391 1119 FunFam Putative E3 ubiquitin-protein ligase HERC1 631 699 - -
Cone20ag0391 1119 FunFam PH, RCC1 and FYVE domains-containing protein 1 208 458 - -
Cone20ag0391 1119 MobiDBLite consensus disorder prediction 1011 1029 - -
Cone20ag0391 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 469 520 IPR000408 -
Cone20ag0391 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 573 624 IPR000408 -
Cone20ag0391 1119 MobiDBLite consensus disorder prediction 958 1029 - -
Cone20ag0391 1119 Coils Coil 825 866 - -
Cone20ag0391 1119 Pfam FYVE zinc finger 625 691 IPR000306 GO:0046872(InterPro)
Cone20ag0391 1119 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 444 454 IPR000408 -
Cone20ag0391 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 299 350 IPR000408 -
Cone20ag0391 1119 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 145 1065 IPR051210 -
Cone20ag0391 1119 SMART fyve_4 624 692 IPR000306 GO:0046872(InterPro)
Cone20ag0391 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 406 457 IPR000408 -
Cone20ag0391 1119 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Cone20ag0391 1119 SUPERFAMILY RCC1/BLIP-II 237 626 IPR009091 -
Cone20ag0391 1119 CDD PH_PLC_plant-like 12 124 - -
Cone20ag0391 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 521 572 IPR000408 -
Cone20ag0391 1119 MobiDBLite consensus disorder prediction 147 206 - -
Cone20ag0391 1119 Gene3D - 13 132 IPR011993 -
Cone20ag0391 1119 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 629 691 IPR017455 -
Cone20ag0391 1119 Coils Coil 881 901 - -
Cone20ag0391 1119 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 285 295 IPR000408 -
Cone20ag0391 1119 MobiDBLite consensus disorder prediction 972 1001 - -
Cone20ag0391 1119 SUPERFAMILY PH domain-like 14 123 - -
Cone20ag0391 1119 PRINTS Chromosome condensation regulator RCC1 signature 568 589 IPR000408 -
Cone20ag0391 1119 PRINTS Chromosome condensation regulator RCC1 signature 301 317 IPR000408 -
Cone20ag0391 1119 PRINTS Chromosome condensation regulator RCC1 signature 351 367 IPR000408 -
Cone20ag0391 1119 PRINTS Chromosome condensation regulator RCC1 signature 408 422 IPR000408 -
Cone20ag0391 1119 PRINTS Chromosome condensation regulator RCC1 signature 510 528 IPR000408 -
Cone20ag0391 1119 PRINTS Chromosome condensation regulator RCC1 signature 392 408 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0391 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0391 Cone-Chr20:1862657 Cone7ag0325 Cone-Chr7:1418135 0 dispersed
Cone17ag0794 Cone-Chr17:6217331 Cone20ag0391 Cone-Chr20:1862657 0 wgd
Cone20ag0391 Cone-Chr20:1862657 Cone4ag1510 Cone-Chr4:11730241 0 wgd
Cone20ag0391 Cone-Chr20:1862657 Cone7ag1441 Cone-Chr7:10201294 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83