Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0392 ATGGACGCTAGAATTTCTGCCTCTCTAGGCCTACCTCCTCCAAATCCTAATCTCCAACCCATCCTCACTGAATTCACCTCACTCTTCACCCACTTCAATTCCTCCATCTTATCCTCTCAAAATCCCATCACCACCGCCACCGACACCACCAAATTTCCCGACCAATTCATGTCCCATTTTCCACTCGCCTCCCTCTCCATATTCACCGAATCTCATATCTTGAAACCCAAATCTCTATATCGGCTAAAACCCACCTCCCTAACCCGCCCCAAAACCCGTTCCCTTATGAAAAATCTGTCCGTCGTAGAACGCGCTCTCATCGGCGCAGCTGGCGGTGGAATCGCCGGGGCGTTCACGTACGTCTGCCTCCATCCACTCGACACCATTAAAACCAAACTGCAAACCAAAGGCGCATCCGACATTTACAACAACACCTTCGACGCCATTGTCAAAACCTTCCAATCCAAAGGCATCCTCGGCTTCTACAGCGGCGTTTCTGCCGTCATTGTCGGCTCAACCGCCTCTTCCGCTATCTACTTTGGCACCTGTGAATTCGGTAAGTCGTTTTTATCGAAATTCCAAAACTACCCGTCTGTCCTTGTCCCTCCTACTGCCGGTGCAATGGGTAATATCGTCTCCTCTGCAATAATGGTGCCGAAAGAGTTAATTACTCAGAGAATGCAAGCAGGAGCTAAGGGTAGATCATGGGAAGTTTTGCTAAGAATTCTGAAGAAAGATGGAATTTTAGGCCTTTATGCAGGTTACTCTGCCACATTGCTTAGAAACTTACCAGCTGGAGTGTTAAGTTATTCTTCATTTGAGTATTTAAAAGCTGCTGTTTTGAGTGGAACAGATAGGACTAATTTGGAGCCAATTCAGAGTGTGTTGTGCGGTGCTTTAGCTGGTGCGATTTCTGCCACTCTTACGACGCCACTTGATGTAGTTAAGACGAGGTTGATGACTCAGGCTAATGAAGAAGCAATGAATAAGGTTGGAGGTGTGGTTTATACAGGGGTTTCTGATACCGTTAAGAAGATACTTAAAGAAGAGGGCTGGATCGGATTTAGTAGAGGAATGGGTCCTAGAGTTGTTCATAGTGCTTGCTTTTCAGCTTTGGGTTACTTTGCGTTTGAGACTGCTAGGCTTATGATCTTGAATCAATATCTCTTGAGGAAGGAGTCTAGTGAACTGGAAAGTTGA 1200 46.25 MDARISASLGLPPPNPNLQPILTEFTSLFTHFNSSILSSQNPITTATDTTKFPDQFMSHFPLASLSIFTESHILKPKSLYRLKPTSLTRPKTRSLMKNLSVVERALIGAAGGGIAGAFTYVCLHPLDTIKTKLQTKGASDIYNNTFDAIVKTFQSKGILGFYSGVSAVIVGSTASSAIYFGTCEFGKSFLSKFQNYPSVLVPPTAGAMGNIVSSAIMVPKELITQRMQAGAKGRSWEVLLRILKKDGILGLYAGYSATLLRNLPAGVLSYSSFEYLKAAVLSGTDRTNLEPIQSVLCGALAGAISATLTTPLDVVKTRLMTQANEEAMNKVGGVVYTGVSDTVKKILKEEGWIGFSRGMGPRVVHSACFSALGYFAFETARLMILNQYLLRKESSELES 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1876488 1879585 + Conep20aG0040600.1 Cone20ag0392 460296

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0392 399 FunFam Protein MITOFERRINLIKE 1, chloroplastic 77 234 - -
Cone20ag0392 399 Gene3D Mitochondrial carrier domain 56 232 IPR023395 -
Cone20ag0392 399 ProSiteProfiles Solute carrier (Solcar) repeat profile. 197 279 IPR018108 -
Cone20ag0392 399 ProSiteProfiles Solute carrier (Solcar) repeat profile. 289 383 IPR018108 -
Cone20ag0392 399 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 55 390 - GO:0000095(PANTHER)|GO:0005743(PANTHER)|GO:0009941(PANTHER)
Cone20ag0392 399 Pfam Mitochondrial carrier protein 204 280 IPR018108 -
Cone20ag0392 399 Pfam Mitochondrial carrier protein 289 386 IPR018108 -
Cone20ag0392 399 Pfam Mitochondrial carrier protein 109 192 IPR018108 -
Cone20ag0392 399 PRINTS Mitochondrial carrier protein signature 121 135 IPR002067 GO:0055085(InterPro)
Cone20ag0392 399 PRINTS Mitochondrial carrier protein signature 171 191 IPR002067 GO:0055085(InterPro)
Cone20ag0392 399 PRINTS Mitochondrial carrier protein signature 298 320 IPR002067 GO:0055085(InterPro)
Cone20ag0392 399 PRINTS Mitochondrial carrier protein signature 108 121 IPR002067 GO:0055085(InterPro)
Cone20ag0392 399 FunFam protein MITOFERRINLIKE 1, chloroplastic 235 399 - -
Cone20ag0392 399 Gene3D Mitochondrial carrier domain 233 398 IPR023395 -
Cone20ag0392 399 SUPERFAMILY Mitochondrial carrier 106 378 IPR023395 -
Cone20ag0392 399 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 189 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0392 K15111 - - cit:102626285 537.339
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0500 Cone-Chr18:2441496 Cone20ag0392 Cone-Chr20:1876488 1.29E-28 dispersed
Cone20ag0361 Cone-Chr20:1621389 Cone20ag0392 Cone-Chr20:1876488 2.92E-35 dispersed
Cone20ag0392 Cone-Chr20:1876488 Cone8ag0066 Cone-Chr8:347083 3.02E-40 dispersed
Cone17ag0795 Cone-Chr17:6242703 Cone20ag0392 Cone-Chr20:1876488 2.49E-246 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1243 . . . . . . . . Cmo04g02550 . . . . . Sed11g1334 . . Bhi04g01803 Tan11g1171 Cmetu03g1357 . Hepe02g2779 . Lcy10g1329 Cla08g00676 Cam08g1106 Cec08g0691 Cco08g0800 Clacu08g0812 . Cre08g0616 . . Cone17ag0795 Cone20ag0392 . . . Cme03g01094 Blo17g00218 Blo18g00217 . Bda13g01526 Bpe02g01604 Bpe14g00335 Bma01g00866 Bma02g00276 . . . . . Car04g02347 . Cpe01g02106 . . . . . . . . . . . . . . . Lsi08g00608 . Chy03g00543 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006009 3 1 2 2 2 1 1 1 1 2 1 1 0 1 1 1 1 2 1 1 2 1 1 1 1 1 1 2 2 1 39