Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0397 ATGGCGCTGATATCTATTGTGCGGGAGTATTTCAATAGGATGTTTCAGGACATTTCGGGAATGAAGGTTCTCATCCTCGATTCTGAAACGGTTAGTATAGTAAGTGTTGCGTACTCCCAGTCTGAACTTCTTCAGAAAGAAGTCTTTTTGGTTGAAGTGGTAGATACCATTTCTATGTCAAGAGAGCCTATGTCTCATCTTAAAGCTGTTTGCTTCCTTAGACCTACATCAGAGAATATCCAGCATTTACGGCGTCAAGTAGCTAATCCTCGGTTTGGGGAGTATCACCTTTTTTTCTCCAACATTTTGAAGGATACTCAGATTCATATAATAGCTGATGCAGATGATCAGGATGTTGTCCAGCAAGTTGTGGAGTACTATGCTGACTTTGTTGCAATAGATCCTTCCCATTTCACTTTAAACATGTCATCAAATCACTTGTATATGCTCCCAGCAGTTGTGGATCCTCCAAAGTTGCAGCACTTCTGCGACCGAGTTGTTGATGGCATTGCTGCACTTTTCTTGGCCCTTAAGCAAAGACCCATTATACGATACCAAAGGACCTCAGATACCGCAAAAAGGATAGCACAGGAAACATGGAAGCTAATGTACCAGCAAGAAAGCGGTCTTTTTGATTTTAGACGGATGGATGTTTCTCCATTGTTGCTGGTCATTGATAGGAGGGATGACCCTGTCACTCCCTTGCTGAATCAGTGGACCTATCAGGCCATGCTTCACGAGTTGATAGGTATTGAAGACAATAAAGTGGACTTGAGAAGCATTGGAAGAGTTTCAAAGGATCAGCAGGAGTTTGTACTATCAGCAGAGCAAGACACATTTTTTAAAGCTAACATCTATGAGAATTTTGGAGATATTGGGATGAATATCAAGAGGTTAGTAGATGACTTCCAGAAGATCGCAAAAAGTAACCAGAACATCCAAACTATAGAGGACATGGCCAAATTTGTTGATAACTACCCAGAGTACAGGAAAATGCATGGCAATGTCTCAAAACATGTGACCTTGGTCACAGAAATGAGCAAGATAGTAGAAGAGAGGAAATTGATGCTTGTTTCCCAGACAGAACAGGAGTTGGCTTGCAACGGTGGGCAAGTGGCTGCTTTTGAGGCAGTCACAAATCTTTTGAACAATGACAGCGTGTCTGATATTGATCGTCTACGTTTAGTGATGCTGTATGCCTTGCGCTACGAAAAGGAGAGCCCAGTTCAACTAATGCAGCTTTTCAACAAACTAGCTTCTCGATCCGCAAAGTACAAACCAGGGCTTGTCCAGTTCCTTTTGAAACAAGCTGGTGTGGATAAGCGAACGGGTGATCTTTTTGGGAATAGAGATCTTTTGAATATTGCTCGTAACATGGCTCGTGGGCTGAAGCTGCAGGGGGTTGAGAATGTGTATACTCAGCATCAACCTCTTCTTCTCCAGACAATGGAAAGCATCATTAAGGGAAGGTTGAAAGATGTGGACTACCCATATATTGGAAATCACTTTCAGCAGGGAAGGCCGCAAGATGTCATCATCTTTGTTGTAGGTGGAACAACATATGAGGAGTCCCGTACTGTTGCTCAACAAAATGCCATCAATCCTGGAATACGTTTTATACTCGGTGGTTCTACGGTTCTCAATTCTAAGAGGTTCTTAAAGGACCTGGAAGAGGCTCAGAGGATATCCCGTTCTAGCGCCGCCATTGTCTGA 1713 42.91 MALISIVREYFNRMFQDISGMKVLILDSETVSIVSVAYSQSELLQKEVFLVEVVDTISMSREPMSHLKAVCFLRPTSENIQHLRRQVANPRFGEYHLFFSNILKDTQIHIIADADDQDVVQQVVEYYADFVAIDPSHFTLNMSSNHLYMLPAVVDPPKLQHFCDRVVDGIAALFLALKQRPIIRYQRTSDTAKRIAQETWKLMYQQESGLFDFRRMDVSPLLLVIDRRDDPVTPLLNQWTYQAMLHELIGIEDNKVDLRSIGRVSKDQQEFVLSAEQDTFFKANIYENFGDIGMNIKRLVDDFQKIAKSNQNIQTIEDMAKFVDNYPEYRKMHGNVSKHVTLVTEMSKIVEERKLMLVSQTEQELACNGGQVAAFEAVTNLLNNDSVSDIDRLRLVMLYALRYEKESPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGVDKRTGDLFGNRDLLNIARNMARGLKLQGVENVYTQHQPLLLQTMESIIKGRLKDVDYPYIGNHFQQGRPQDVIIFVVGGTTYEESRTVAQQNAINPGIRFILGGSTVLNSKRFLKDLEEAQRISRSSAAIV 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1922722 1931785 - Conep20aG0041100.1 Cone20ag0397 460301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0397 570 Gene3D - 3 127 IPR043154 -
Cone20ag0397 570 SUPERFAMILY Sec1/munc18-like (SM) proteins 1 558 IPR036045 -
Cone20ag0397 570 Gene3D - 147 557 IPR027482 -
Cone20ag0397 570 Gene3D - 353 476 - -
Cone20ag0397 570 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 3 553 IPR001619 GO:0000139(PANTHER)|GO:0006886(PANTHER)|GO:0016192(PANTHER)|GO:0016192(InterPro)
Cone20ag0397 570 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 238 351 IPR043127 -
Cone20ag0397 570 FunFam Vacuolar sorting protein 3 128 - -
Cone20ag0397 570 PIRSF VPS45_Sec1 1 567 IPR001619 GO:0016192(InterPro)
Cone20ag0397 570 Pfam Sec1 family 22 555 IPR001619 GO:0016192(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0397 K12479 - - csv:101203589 966.452
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0397 Cone-Chr20:1922722 Cone9ag0715 Cone-Chr9:3424393 4.29E-25 dispersed
Cone17ag0798 Cone-Chr17:6267546 Cone20ag0397 Cone-Chr20:1922722 7.52E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1219 . . . . . . . . Cmo04g02542 Cmo15g00629 . . . . Sed01g3642 . Cpe13g00665 Bhi04g01816 Tan11g1186 Cmetu03g0425 . Hepe02g2770 . Lcy10g1316 . . . . . . . . . Cone17ag0798 Cone20ag0397 . . . Cme03g00395 Blo17g00221 . . Bda13g01531 . Bpe14g00330 . Bma02g00280 . . . . . Car04g02340 Car15g00571 Cpe01g02102 . . . . . . . . . . . . . . . Lsi08g00525 . Chy03g00589 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007852 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35