Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0399 ATGGTCGGCAGGTGGCGGTGTTTAGGGGGGCTACCGGTGATCGCTATCGTGTTGGCCGCCGTTGGTTTGAGGATTGTGCAAAGTTACCCGGTTGAGGATCTGGTGGTGAGTCTGCCTGGGCAACCAAGGGTTGGCTTCAGGCAATATGCTGGCTATGTTGATGTCGATTTGGAGAGTGGGAGAAGCTTGTTTTATTACTTTGTTCAAGCTGAAAATGATCCTGATTACAAGCCTCTCTCTCTTTGGCTCAATGGAGGTCCAGGTTGTTCCTCAATAGGGGGAGGTGGTTTTACAGAGTTGGGTCCATTCTACCCTAGAGGCGATGGTCGTGGTCTTCGAAGCAATTCTATGTCGTGGAACAAAGCTTCAAACCTCTTGTTTGTGGAGTCTCCTGCTGGAGTAGGATGGTCATACTCAAACACAACGTCTGATTATACTACTGGCGATGCCTCAACTGCCAGGGATATGTACGTCTTCTTGTTGAAATGGTATGACAAATTTCCAGTTTTCCGAGATAGAGCTCTGTTTCTCACCGGAGAAAGCTATGCAGGTCACTACGTACCACAGTTGGCTGATGTTCTTTTGGACCACAATGCGCGTTCTACAGATTTCAAGTTCAACATCAAGGGAGTTGGTATAGGGAACCCCCTGTTAAAACTCGACCGGGATGTTTCGGCAAAATACGAATTCTTCTGGTCGCACGGAATGATTTCCGATGAAGTCGGCCTTACAATAATGAATGAATGTGAGTTTGAAGATTATGTATTTCCAAGTACTCATAATGTCTCTCTTCAATGCAACGAAGCCCTATCTCAAGCAAACTCCATTGTTGGTGATTACATTAACCCTTATGATGTTATCCTTGACATCTGTTATCCTTCTATCGTCGAGCAAGAGCTGAGGCTTAAAAAACTGGCCACTAAGATTAGCATTGGGGTTGATGTATGTATATCCTATGAAAGAAGATTCTACCTTAATCTTCCTATGGTTCAGAAAGCTCTTCATGCTAATCGCACTAATTTACCTTATCCTTGGTCTATGTGCAGTGGTGTATTGAATTATAGTGAAGCTGATGGTGACTTAAACATGCTGCCATTGCTCAAGAGGATTGTACAAGCTCGTATTCCAGTTTGGATCTTTAGTGGGGATCAAGATTCTGTGGTTCCATTGTTGGGCTCTCGCACGCTGGTTCGTGAACTTGCTCGCGACCTCGACTTCAAAATCACAGTCCCATATAGAGCTTGGTTTCACAAAGGCCAGGTTGGAGGTTGGACGATTGAGTACGGAAATATATTGACGTTTGTGACAGTGAAAGGAGCGGCTCATATGGTGCCTTATGCTCAACCATCTAGAGCTTTACATTTGTTTTCTTCATTTGTGCGTGGCCGCAGATTACCTAGCACTGCTCGCCCTTCATTTGATTAA 1425 44.91 MVGRWRCLGGLPVIAIVLAAVGLRIVQSYPVEDLVVSLPGQPRVGFRQYAGYVDVDLESGRSLFYYFVQAENDPDYKPLSLWLNGGPGCSSIGGGGFTELGPFYPRGDGRGLRSNSMSWNKASNLLFVESPAGVGWSYSNTTSDYTTGDASTARDMYVFLLKWYDKFPVFRDRALFLTGESYAGHYVPQLADVLLDHNARSTDFKFNIKGVGIGNPLLKLDRDVSAKYEFFWSHGMISDEVGLTIMNECEFEDYVFPSTHNVSLQCNEALSQANSIVGDYINPYDVILDICYPSIVEQELRLKKLATKISIGVDVCISYERRFYLNLPMVQKALHANRTNLPYPWSMCSGVLNYSEADGDLNMLPLLKRIVQARIPVWIFSGDQDSVVPLLGSRTLVRELARDLDFKITVPYRAWFHKGQVGGWTIEYGNILTFVTVKGAAHMVPYAQPSRALHLFSSFVRGRRLPSTARPSFD 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1935815 1939475 + Conep20aG0041300.1 Cone20ag0399 460303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0399 474 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 459 IPR001563 GO:0004185(PANTHER)|GO:0004185(InterPro)|GO:0006508(InterPro)
Cone20ag0399 474 Gene3D - 316 352 - -
Cone20ag0399 474 ProSitePatterns Serine carboxypeptidases, serine active site. 177 184 IPR018202 GO:0004185(InterPro)
Cone20ag0399 474 Gene3D - 363 462 - -
Cone20ag0399 474 FunFam Carboxypeptidase 363 462 - -
Cone20ag0399 474 FunFam Carboxypeptidase 29 293 - -
Cone20ag0399 474 Gene3D alpha/beta hydrolase 31 292 IPR029058 -
Cone20ag0399 474 Pfam Serine carboxypeptidase 39 462 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone20ag0399 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 138 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone20ag0399 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone20ag0399 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 115 127 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone20ag0399 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 432 445 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Cone20ag0399 474 SUPERFAMILY alpha/beta-Hydrolases 35 465 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0399 K16297 - - rcu:8285113 776.548
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0656 Cone-Chr14:3291606 Cone20ag0399 Cone-Chr20:1935815 1.23E-121 dispersed
Cone15ag0666 Cone-Chr15:3503525 Cone20ag0399 Cone-Chr20:1935815 4.34E-138 dispersed
Cone20ag0399 Cone-Chr20:1935815 Cone20ag1047 Cone-Chr20:7304959 3.02E-123 dispersed
Cone20ag0399 Cone-Chr20:1935815 Cone4ag1519 Cone-Chr4:11779008 1.55E-117 wgd
Cone20ag0399 Cone-Chr20:1935815 Cone7ag1433 Cone-Chr7:10173412 7.45E-281 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1215 . . . . . . . . Cmo04g02540 Cmo15g00631 . Cma09g01090 . . Sed11g1328 Cpe06g00890 . Bhi04g01820 Tan11g1189 Cmetu01g2322 . Hepe02g2767 . Lcy10g1313 Cla08g00662 Cam08g1093 Cec08g0678 Cco08g0787 Clacu08g0798 . Cre08g0601 . Cone7ag1433 . Cone20ag0399 . . . Cme03g00398 . Blo18g00222 . . . . Bma01g00874 . . . Cmo09g01099 . . Car04g02338 Car09g00988 Cpe01g02099 . Bhi09g01511 . . . . Mch11g1423 . Cla09g00918 Cam09g0970 Cec09g0975 Cco09g0981 . . Cre09g0939 Lsi08g00522 . Chy03g00587 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002124 1 2 1 1 1 2 3 2 2 2 2 2 1 2 3 3 2 3 2 2 2 2 2 2 2 2 3 7 2 2 65