Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0406 ATGGTAAGTTCGGGGACACACACTCCAATGGGTGGGCCCCAGTCTGTTTCGCCATCACTTTTGCGGTCGAATTCTGGAATGCTGGGGGTTCAAGGGGGTTCACCTCAGACGAATTTCCCATCACTTGTGTCCCCTCGGACGCCATTTACTAACATAAATATGCTTGGTAACATGGCGAATGTGTCATCCCTACTTAACCAGTCTTTTGGAAATGGAGGTCCAAGTTCTGGGCTCGCAGGCTCTGGTGGAAGCCAGCGTAGTGGAGGGATTGACCCAAATTCCGAGGTGGACCCGCTTTCCGGGGTTAGCAATGGGATGAGCTTCAATAACCCGTCATCGTCATTTGTAGCATCTAACATTGCAAATCCCAGTTTGTCCGGTCAAGGTCAGGGCCCCCAATTTTCAAATCTCGCAAATAGTCAACTACTGTCAGATCATCAGCAGTCTCAACAACCTGAACCTCAGAACTTCCAGCAAGGTCAACAGTCAATACACCAGTTCTCTGGTTCTCAGTCCACCCAACAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAGCAATTTCAAGTCATCCGAGGAGGAGGAGGCTTAGGTGGTCTAGGATCGGTTGTAAAATTGGAGCCTCAATTGACTAGCAATGACCATCAGCAAGGACAGCTTACCCAACAGGCATTGAGGAACCTTGGTCCAGTGAAGTTGGAATCACAGAGACTTCAGTCTAGTAGAACATTAGTTCCTGTCAAAATGGAACCACAACAATCTGATCAATCTGTTTTCTTACATCAACAGCAGCAGCAACAACAACAACATCAACAACAACAACAACAACAACAGCAACAATTTTTTCATATGTCGAGACAACCCTCTCAGGCTGCTGCTGCTCAGATAAGTCTTTTGCATCAGCAAAGATTATTACAGCTACAACAACAGCATCAGCAGCAGCAACAACAGCAGCAGCTCTTCAAGTCAATGCCTCAACAGAGGCCACAATTACAACAGCAGAATGTTCCTCTGAGATCTCTTGGAAAGCCATTGTATGAACCTGGAATGTGTGCTCGGCGTCTGACTCATTACATGCATCGGCAACAACAGAGACCTGAAGACAATGATATTGAGTTCTGGAGGAAGTTTGTTGCTGAGTACTATGCGCCCCATGCCAAAAAGAAGTGGTGTGTATCCATGTATGGAAATGGTCGACACACAACCGGAGTTTTCCCTCAGGATGTCTGGCATTGTGAGATATGCAATCGTAAGCCAGGGCGTGGTTTTGAAGCGACTTTTGAAGTTCTTCCCAGACTATTCAAAATCAAGTACGAAAGTGGTACTCTCGAAGAACTTCTCTATGTTGATATGCCCAGTGAATACCATAACTCGTCAGGTCAGATTGTTCTGGACTATGCAAAAGCGATACAGGAAAGTGTTTTTGAGCAGCTTCGTGTTGTTCGTGATGGCCAACTTCGAATAGTTTTCTCCCAAGATCTAAAGATATGTTCATGGGAATTTTGTGCTCGACGGCATGAAGAGCTTATACCCCGAAGATTATTAATACCTCAGGTTAGTCAGCTAGGGGCAGCAGCTCAAAAGTATCAGACTTCTATTCAAAATGTATCATCCAATTTATCTGCTTCGGAGTTGCAAAATAATTGTAATACGTTTGTAGCATCAGCTCGACAATTGGCTAAAGCTTTGGAGGTTCCATTAGTGAATGATTTAGGATATACAAAGAGATATGTGCGGTGTCTTCAGATATCTGAAGTGGTCAACAGTATGAAAGACTTGATTGATTACAGCCGTGAAACAGGCACTGGACCAATGGAGAGTTTGGCCAAGTTTCCTCGGAGAATAAGACCTTCATCCGGGTTTAACAATCAAGCACAACAGCCGGAGGAACAGTTACTTCAGCAGCAGCAGCAGCAAGCAGTTGTCCCCAATCCAAACATTGACCAAACCTCTGTCCAAACTCCTCCTATGCAACTTGCTACAACCAATGGAGTGACTAATAATCCTGTAAACCCAGCTCCAGCCCCTACCTCGACTTCTGCAAGCACAATTGTTGGTCTACTCCACCAAAACTCAATGAAATCCAGACAGCAAAGTGCAGCCAGTCCCTATGCAGGAGGAAATACGGGGCAGATCTCATCCCCAACCTCTTCTGGCCCAATCCCACAAGCCCAACCCAACAATCCTTCCTCATTCCAAGCCCCAACACCCACATCAGCCAACAATCCTCAAAGTGGTGTATCCCCTGCCAACAACCACATGAGCACAGCAAACTCTTCGGCCAATGTCTCCTTGCTGCAACCGACACTCTCTGGAGATACCGATGCAAGTGATTCCCAAAGCTCCGTCCAGAAAATCTTTCAGGAAATGATGATGTCAAGTCAAATGAATGGCCCGGTTAGTAGTATGGGCGGAGTTGGTCCTATTGGAAATGACGTAAAAAACAATGTCAATGGGATTGTTCGAACAAACAACAATGGTAACTGTCCGGTTGGAAATGGGACGGTGAACAGTAATTCTGGTATTGGAGGTGGTGTTGGTGGATATGGTAATATGAGTATGGTTAATGGGATTAGGTCAAATATGGTAAACAATTCAGTTATGAATGGAAGGATGGGAATAGCGACTTTAGCTCGAGAACAGAGTATGAATCAACATCATCAACAAGATTTGGGAGACCAGCTTCTGAGTGGACTTGGAGCTGTTAATGGCTTTAATAATCTTCAATTCGATTGGAAGTCGTCGCCTTGA 2754 45.35 MVSSGTHTPMGGPQSVSPSLLRSNSGMLGVQGGSPQTNFPSLVSPRTPFTNINMLGNMANVSSLLNQSFGNGGPSSGLAGSGGSQRSGGIDPNSEVDPLSGVSNGMSFNNPSSSFVASNIANPSLSGQGQGPQFSNLANSQLLSDHQQSQQPEPQNFQQGQQSIHQFSGSQSTQQQQQQQQQQQQQQQFQVIRGGGGLGGLGSVVKLEPQLTSNDHQQGQLTQQALRNLGPVKLESQRLQSSRTLVPVKMEPQQSDQSVFLHQQQQQQQQHQQQQQQQQQQFFHMSRQPSQAAAAQISLLHQQRLLQLQQQHQQQQQQQQLFKSMPQQRPQLQQQNVPLRSLGKPLYEPGMCARRLTHYMHRQQQRPEDNDIEFWRKFVAEYYAPHAKKKWCVSMYGNGRHTTGVFPQDVWHCEICNRKPGRGFEATFEVLPRLFKIKYESGTLEELLYVDMPSEYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSQDLKICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQTSIQNVSSNLSASELQNNCNTFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRETGTGPMESLAKFPRRIRPSSGFNNQAQQPEEQLLQQQQQQAVVPNPNIDQTSVQTPPMQLATTNGVTNNPVNPAPAPTSTSASTIVGLLHQNSMKSRQQSAASPYAGGNTGQISSPTSSGPIPQAQPNNPSSFQAPTPTSANNPQSGVSPANNHMSTANSSANVSLLQPTLSGDTDASDSQSSVQKIFQEMMMSSQMNGPVSSMGGVGPIGNDVKNNVNGIVRTNNNGNCPVGNGTVNSNSGIGGGVGGYGNMSMVNGIRSNMVNNSVMNGRMGIATLAREQSMNQHHQQDLGDQLLSGLGAVNGFNNLQFDWKSSP 917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1971557 1979343 + Conep20aG0042000.1 Cone20ag0406 460310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0406 917 Coils Coil 261 281 - -
Cone20ag0406 917 MobiDBLite consensus disorder prediction 618 681 - -
Cone20ag0406 917 MobiDBLite consensus disorder prediction 317 343 - -
Cone20ag0406 917 PANTHER LIM DOMAIN-BINDING PROTEIN 212 909 IPR029005 GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER)
Cone20ag0406 917 MobiDBLite consensus disorder prediction 693 763 - -
Cone20ag0406 917 MobiDBLite consensus disorder prediction 1 44 - -
Cone20ag0406 917 MobiDBLite consensus disorder prediction 616 681 - -
Cone20ag0406 917 MobiDBLite consensus disorder prediction 317 340 - -
Cone20ag0406 917 MobiDBLite consensus disorder prediction 142 181 - -
Cone20ag0406 917 MobiDBLite consensus disorder prediction 72 107 - -
Cone20ag0406 917 Pfam LIM-domain binding protein 355 609 IPR029005 -
Cone20ag0406 917 MobiDBLite consensus disorder prediction 250 288 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1132 Cone-Chr1:55600990 Cone20ag0406 Cone-Chr20:1971557 1.23E-107 dispersed
Cone20ag0406 Cone-Chr20:1971557 Cone5ag0840 Cone-Chr5:3596482 2.37E-106 dispersed
Cone17ag0802 Cone-Chr17:6346743 Cone20ag0406 Cone-Chr20:1971557 0 wgd
Cone20ag0406 Cone-Chr20:1971557 Cone4ag1452 Cone-Chr4:11511786 9.00E-256 wgd
Cone20ag0406 Cone-Chr20:1971557 Cone7ag1480 Cone-Chr7:10392817 2.38E-235 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0406 - - - 0.0