Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0408 ATGGCGCAGGGAAGAGTCAGTGCGGTGGAGAAGTGGGCAACCATTGTTGGGATGCTTATATGCTGCATGGTGGTTGTTCAGTTGGAATATGTTGAGGCAGCAAATTTCGTTGTCGGTGACACTGGTGGTTGGACCTTTAACCTCGATTCTTGGCCGAAGGGAAAGCGTTTCCGAGCTGGCGATTTGCTTAAATTCAACTACGATCCAACAATTCACAACGTGGTAGCAGTGGACAAGAGCGGTTACACGAACTGCAGGTCGCCGACCGGTGCAAAGGTGTTTAAGTCTGGAAAGGATCAGGTCAAGCTTGCCAAAGGACTCAACTACTTCATCTGCAGTACTGCTGGGCATTGTGAGTCTGGCATGAAGATTGCTGTTAATGCTCTTTAG 390 48.97 MAQGRVSAVEKWATIVGMLICCMVVVQLEYVEAANFVVGDTGGWTFNLDSWPKGKRFRAGDLLKFNYDPTIHNVVAVDKSGYTNCRSPTGAKVFKSGKDQVKLAKGLNYFICSTAGHCESGMKIAVNAL 129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1984118 1985231 + Conep20aG0042200.1 Cone20ag0408 460312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0408 129 FunFam basic blue protein-like 34 128 - -
Cone20ag0408 129 Pfam Plastocyanin-like domain 44 122 IPR003245 GO:0009055(InterPro)
Cone20ag0408 129 CDD Plantacyanin 34 128 IPR041844 -
Cone20ag0408 129 SUPERFAMILY Cupredoxins 35 128 IPR008972 -
Cone20ag0408 129 Gene3D - 34 128 IPR008972 -
Cone20ag0408 129 ProSiteProfiles Phytocyanin domain profile. 34 129 IPR003245 GO:0009055(InterPro)
Cone20ag0408 129 PANTHER BLUE COPPER PROTEIN 23 127 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0408 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1192 Blo01g01321 . Bda01g00688 . Bpe02g00618 . . Bma01g02106 . Cmo15g00642 . . . . Sed01g0954 . . Bhi04g01831 Tan11g1205 Cmetu03g0089 . Hepe02g2751 . Lcy10g1303 . . . . . . . . . . Cone20ag0408 . . . Cme03g00426 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00269 . Chy03g00573 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000300 8 5 4 2 2 5 6 3 5 4 3 5 8 4 4 7 5 4 3 4 4 5 2 4 6 5 4 8 6 4 139