Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0409 ATGGATTCTTCATCGTCTTCGTCAAGTCAGCCTGAGTTTGATTATCTGTTCAAGTTGCTGTTGATTGGAGATTCTGGAGTTGGAAAGAGCACTCTTTTGTTGAGCTTTACTTCCGATACTTTTGAAGATCTTTCTCCCACCATTGGTGTTGATTTCAAGGTTAAACATGTAACAATTGGGGGAAAGAAGTTGAAGCTTGCAATTTGGGACACGGCTGGACAGGAAAGATTTAGAACACTTACAAGCTCATATTACAGAGGAGCTCAAGGGATTGTAATGGTTTATGACGTAACAAGGCCAGAAACGTTTACAAACCTGTCTGATATATGGGCTAAAGAAATTGATCTCTATTCAACTAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTTGACAAGGAAAGCGAAAGGATGGTCAGCAAAAAAGAGGGGATTGAGTTTGCTCGGGAGTATGGGTGCCTTTTTCTTGAATGCAGTGCTAAAACTCGAGTCAATGTAGAACAGTGCTTCGAGGAGCTTGTATTAAAGATTTTGGATACGCCGAGTCTATTGGCAGAAGGCTCATCAGGTGTGAAGAAGAACATATTCAAACAGAAAGCTCCTCAAACTGATGCATCAGCCAGTGGCTGTTGCTCATGGTGA 645 41.24 MDSSSSSSSQPEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEDLSPTIGVDFKVKHVTIGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIVMVYDVTRPETFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERMVSKKEGIEFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLAEGSSGVKKNIFKQKAPQTDASASGCCSW 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1985749 1987795 + Conep20aG0042300.1 Cone20ag0409 460313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0409 214 ProSiteProfiles small GTPase Ras family profile. 9 214 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone20ag0409 214 ProSiteProfiles small GTPase Rab1 family profile. 12 212 - -
Cone20ag0409 214 SMART rho_sub_3 19 181 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone20ag0409 214 SMART ran_sub_2 22 214 - -
Cone20ag0409 214 ProSiteProfiles small GTPase Rho family profile. 10 179 - -
Cone20ag0409 214 Gene3D - 10 212 IPR027417 -
Cone20ag0409 214 CDD Rab18 17 178 - -
Cone20ag0409 214 PANTHER RAS-RELATED PROTEIN RAB 15 186 IPR050227 GO:0016192(PANTHER)
Cone20ag0409 214 SMART rab_sub_5 17 181 - -
Cone20ag0409 214 PRINTS Transforming protein P21 ras signature 17 38 - -
Cone20ag0409 214 PRINTS Transforming protein P21 ras signature 121 134 - -
Cone20ag0409 214 PRINTS Transforming protein P21 ras signature 39 55 - -
Cone20ag0409 214 PRINTS Transforming protein P21 ras signature 156 178 - -
Cone20ag0409 214 PRINTS Transforming protein P21 ras signature 57 79 - -
Cone20ag0409 214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 187 IPR027417 -
Cone20ag0409 214 FunFam Ras-related protein RABC1 10 212 - -
Cone20ag0409 214 Pfam Ras family 18 179 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone20ag0409 214 SMART ras_sub_4 14 181 - -
Cone20ag0409 214 NCBIfam small GTP-binding protein domain 15 173 IPR005225 GO:0005525(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0409 K07910 - - gmx:100794330 400.593
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1243 Cone-Chr13:9486936 Cone20ag0409 Cone-Chr20:1985749 1.86E-94 dispersed
Cone19ag1229 Cone-Chr19:8503486 Cone20ag0409 Cone-Chr20:1985749 7.68E-103 dispersed
Cone1ag1384 Cone-Chr1:56691087 Cone20ag0409 Cone-Chr20:1985749 1.90E-91 dispersed
Cone20ag0409 Cone-Chr20:1985749 Cone5ag0375 Cone-Chr5:1596602 2.60E-89 dispersed
Cone17ag0804 Cone-Chr17:6359994 Cone20ag0409 Cone-Chr20:1985749 5.72E-147 wgd
Cone20ag0409 Cone-Chr20:1985749 Cone6ag1273 Cone-Chr6:10166897 4.24E-125 wgd
Cone20ag0409 Cone-Chr20:1985749 Cone9ag1233 Cone-Chr9:9005960 1.88E-128 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1182 . . . . . . . . . . Cma01g01016 . Car01g00897 . . . . Bhi04g02196 . . . . . . . . . . . . . . . Cone17ag0804 Cone20ag0409 . . . . . . . . . . . . . Cmo01g01058 . . . . . . Cpe02g00861 . . . . . . . . . . . . . . . . Chy03g00809 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000246 3 6 3 2 3 5 8 5 4 5 4 5 7 5 5 6 5 9 7 5 5 5 4 5 4 5 5 6 10 3 154