Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0410 ATGGTGAAAGAAACAGAGTACTATGATGTTCTTGGTGTTTCCCACTCCGCTTCCGAGGAGGAAATTCGAAAGGCTTATTACCTAAAGGCAAGACAAGTTCATCCAGATAAGAATCCAAATGACCCTCAGGCAGCTGAAAGGTTCCAGGAAAGTCTAATATTGGGGGAAGCTTATCAAGTTTTGAGTGATCCGGGGCAAAGAGATGCATATGATCGGAATGGAAAACACTTCATATCGAGGGACTCCATGCTTGATCCTACTGCTGTATTCTCACTTCTGTTTGGGAGTGAATTATTCGAGGACTATATCGGACATGTTGCAGTAGCTTCAATCGCTTCTTCTGAACTAGCCAGTGAAAATGAAAATCCAGAGAAACTTCACGAAAAGTTGAGGGCTATCCAGAAAGAAAGAGAAGAAAAACTAGCAAGATCACTTACAGATATTCTTAATCAATATGTTCGAGGTGACAAGCAAGGATTTATACGAAATGCTGAATCCGAAGCTAAACGGCTTTCTGGAGCAGCCTTTTCCGTTAACATATTGCGCACAATTGGATACATATATTCGAGACAGGCAGCACAAAAGCTAGGAAAGAAAGCTGTCTATCTTGGGGTTCCGTTTGTGGCCGAATGGGTTCGAAACAAGGGGCATTTTTGGAAATCACAGATGACAGCCGCGAAAGGTGCTTTTCAATTGTTGCAGCTTCAAGAAGACATAAGGAAACAATTTAAAATGGATGGAGGTGGCTCTGAAAACAACATAGAATCACACATAAGGTTAAATAAGGATACATTAATGAGCTCATTATGGAAATTGAATGTTGTCGACATAGAAGTTACCCTTGTCCATGTGTGTCAAATGGTGTTGCAGGATGCTAGTGTTAGAAGGGAAGACCTTAAAGCTCGAGCCCTCGCTCTGAAAATTCTCGGAAAGATATATCGGGGAAAGAATGGGAGAAATGGTGGAACGTCAAGAAGGAAAGAAGAAGAAGATGATGGCTCCAGTTCTGATAGCAGTGAGGAAGAGTATTCACCAAGATCTCTATCATATCGAACACCTTTTCTTTATCAGGGCATTGGAAGACTTTTCAGATGCCTCTGTAACCCAGCATTTGATGTGGATGACGAAGAAATTGTGTACAAAAGCAAATGA 1152 41.41 MVKETEYYDVLGVSHSASEEEIRKAYYLKARQVHPDKNPNDPQAAERFQESLILGEAYQVLSDPGQRDAYDRNGKHFISRDSMLDPTAVFSLLFGSELFEDYIGHVAVASIASSELASENENPEKLHEKLRAIQKEREEKLARSLTDILNQYVRGDKQGFIRNAESEAKRLSGAAFSVNILRTIGYIYSRQAAQKLGKKAVYLGVPFVAEWVRNKGHFWKSQMTAAKGAFQLLQLQEDIRKQFKMDGGGSENNIESHIRLNKDTLMSSLWKLNVVDIEVTLVHVCQMVLQDASVRREDLKARALALKILGKIYRGKNGRNGGTSRRKEEEDDGSSSDSSEEEYSPRSLSYRTPFLYQGIGRLFRCLCNPAFDVDDEEIVYKSK 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 1988766 1991407 + Conep20aG0042400.1 Cone20ag0410 460314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0410 383 CDD DnaJ 6 63 IPR001623 -
Cone20ag0410 383 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 2 341 IPR052423 -
Cone20ag0410 383 PRINTS DnaJ domain signature 8 26 IPR001623 -
Cone20ag0410 383 PRINTS DnaJ domain signature 46 66 IPR001623 -
Cone20ag0410 383 PRINTS DnaJ domain signature 26 41 IPR001623 -
Cone20ag0410 383 PRINTS DnaJ domain signature 66 85 IPR001623 -
Cone20ag0410 383 SMART dnaj_3 5 66 IPR001623 -
Cone20ag0410 383 MobiDBLite consensus disorder prediction 319 345 - -
Cone20ag0410 383 Pfam DnaJ domain 6 71 IPR001623 -
Cone20ag0410 383 Pfam X-domain of DnaJ-containing 134 318 IPR026894 -
Cone20ag0410 383 SUPERFAMILY Chaperone J-domain 2 104 IPR036869 -
Cone20ag0410 383 ProSiteProfiles dnaJ domain profile. 6 74 IPR001623 -
Cone20ag0410 383 Gene3D DnaJ domain 1 85 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0410 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1483 Cone-Chr17:10006195 Cone20ag0410 Cone-Chr20:1988766 1.60E-126 dispersed
Cone20ag0410 Cone-Chr20:1988766 Cone8ag1214 Cone-Chr8:10296926 8.32E-109 dispersed
Cone17ag0805 Cone-Chr17:6367797 Cone20ag0410 Cone-Chr20:1988766 4.54E-235 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1178 . Blo12g00834 . Bda03g00342 . Bpe04g00302 . . Cmo04g02530 Cmo15g00644 . . . . . . Cpe13g00655 Bhi04g01834 . . . . . . . . . . . . . . . Cone17ag0805 Cone20ag0410 . . . Cme03g00430 . Blo18g00226 . Bda01g01383 Bpe02g01596 . Bma01g00878 . . . . . . Car04g02328 Car15g00585 Cpe01g02091 . . . . . . . . . . . . . . . . . Chy03g00571 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002184 1 3 2 3 3 1 3 1 0 2 1 2 2 1 2 3 0 3 2 1 2 2 2 2 1 3 2 4 2 2 58